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path: root/quality_control/parsing.py
AgeCommit message (Expand)Author
2022-04-21Collect all the errors•••Build a function to collect all the parsing errors into a "sequence" of dict objects containing the issues found. Frederick Muriuki Muriithi
2022-04-20Update parameters for tests•••Derive a "correct" sample file from an existing sample file with errors for testing with large files. Fix issue caught by test. Frederick Muriuki Muriithi
2022-04-20Fix linting issuesFrederick Muriuki Muriithi
2022-04-13Implement remaining file parsing tests•••* Implement remaining file parsing tests and some helpers functions needed for ensuring the tests work. Frederick Muriuki Muriithi
2022-04-13Check for `DuplicateHeader` errors in `parse_file` functionFrederick Muriuki Muriithi
2022-04-13Implement test for parsing that fails•••* Improve tests that ensure parsing fails in case the file has errors * Add strains.csv file * Implement minimum viable functionality that passes the implemented tests Frederick Muriuki Muriithi
2022-04-13Add tests outline for file parsing•••Add dummy failing tests and a stub for the parsing of the files Frederick Muriuki Muriithi