gn-uploader - gn-uploader: Data uploader for GeneNetwork

Age	Commit message (Collapse)	Author
2022-06-15	Fix linting and type errors	Frederick Muriuki Muriithi

2022-06-15	Setup test fixtures and initial tests for web-UI	Frederick Muriuki Muriithi

2022-06-13	Add upload progress indicator	Frederick Muriuki Muriithi

2022-06-10	Enable upload of zipfiles	Frederick Muriuki Muriithi

2022-06-02	Enable user abortion of file parsing	Frederick Muriuki Muriithi
	Enable the user to abort the background parsing of the file.
2022-06-02	Expire the jobs in 14 days by default	Frederick Muriuki Muriithi

2022-06-02	Add an error display to the progress status report	Frederick Muriuki Muriithi
	Enable the progress status page to show all the errors found at any point during the processing of the file.
2022-05-27	Remove unnecessary print statement	Frederick Muriuki Muriithi

2022-05-20	Use standard-error rather than standard_error for consistency	Frederick Muriuki Muriithi
	The CLI scripts use "standard-error" so update the web version to fit in with that.
2022-05-20	Fix minor bugs	Frederick Muriuki Muriithi

2022-05-20	Handle errors	Frederick Muriuki Muriithi
	Implement code to handle errors in the processing of files.
2022-05-19	Update Web-UI: use new error collection paradigm	Frederick Muriuki Muriithi
	- README.org: document how to run scripts manually - manifest.scm: remove python-rq as a dependency - qc_app/jobs.py: rework job launching and processing - qc_app/parse.py: use reworked job processing - qc_app/templates/job_progress.html: display progress correctly - qc_app/templates/parse_results.html: display final results - scripts/worker.py: new worker script
2022-05-02	Optimise strain names parsing	Frederick Muriuki Muriithi
	- Use a way faster way of parsing the strains file
2022-04-28	Use sqlite3 to save the jobs metadata	Frederick Muriuki Muriithi
	* Use sqlite to save the jobs metadata and enable UI update of the progress for large files
2022-04-28	Update queuing and display results of file parsing	Frederick Muriuki Muriithi
	* Make the 'worker' functions free from needing the application context by passing all the details they need as arguments. * Enable the display of parsing results.
2022-04-26	Fix issues caught processing the jobs	Frederick Muriuki Muriithi
	* Create and push the application context for the worker functions * Fix the update of meta fields
2022-04-26	Queue file parsing jobs	Frederick Muriuki Muriithi
	Enable the queuing of file parsing jobs, since the files could be really large and take a long time to parse and present results. * etc/default_config.py: Add default config for redis server * manifest.scm: Add redis, and rq as dependencies * qc_app/__init__.py * qc_app/jobs.py: module to hold utilities for management of the jobs * qc_app/parse.py: Enqueue the job - extract file-parsing code to callable function * qc_app/templates/base.html: Enable addition of extra meta tags * qc_app/templates/job_progress.html: template to display job progress * qc_app/templates/no_such_job.html: template to indicate when a job id is invalid * quality_control/parsing.py: Add the total size parsed so far
2022-04-25	Call parsing function. Fix a few issues.	Frederick Muriuki Muriithi
	* qc_app/entry.py: Pass filetype onward to parsing endpoint * qc_app/parse.py: Call the function(s) necessary to parse a file * quality_control/errors.py: Fix argument passing to super class
2022-04-25	Implement file upload	Frederick Muriuki Muriithi

2022-04-25	UI: Add index page and basic styling	Frederick Muriuki Muriithi
	Add template(s) for the index page and some basic styling to get started with.
2022-04-20	Add scaffolding for web app	Frederick Muriuki Muriithi
	Add a basic scaffolding for the web interface to the quality-control application.