| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2024-01-08 | Extract common database functions into a separate package. | Frederick Muriuki Muriithi | |
| 2024-01-05 | Improve styling. | Frederick Muriuki Muriithi | |
| 2024-01-05 | UI to select the population under which the data falls. | Frederick Muriuki Muriithi | |
| 2024-01-05 | Initialise R/qtl2 bundle upload path | Frederick Muriuki Muriithi | |
| Initialise the upload path for R/qtl2 bundles. This commit adds UI that allows the user to select from existing species, before proceeding to the next stage. | |||
| 2023-12-20 | Reduce table columns | Frederick Muriuki Muriithi | |
| Reduce the table columns displayed by javascript for the platforms. | |||
| 2023-12-20 | Add favicon | Frederick Muriuki Muriithi | |
| Add a favicon to reduce noise in the logs due to failed requests. | |||
| 2023-12-19 | Commit missing templates. | Frederick Muriuki Muriithi | |
| 2023-12-19 | Bug: Commit population before trying to upload data. | Frederick Muriuki Muriithi | |
| 2023-12-18 | Samples: Hook-up external async script to upload the samples. | Frederick Muriuki Muriithi | |
| 2023-12-14 | samples: Create external script and fix some bugs. | Frederick Muriuki Muriithi | |
| 2023-12-14 | Pass connection to `species_by_id` function. | Frederick Muriuki Muriithi | |
| To make `species_by_id` function reusable even outside of the application context, pass in the database connection instead of creating the connection inside the function. | |||
| 2023-12-11 | samples: Fix bugs in code saving samples to db | Frederick Muriuki Muriithi | |
| * Check whether first row in file is for headings * Break infinite loop: check batch has content * Update saving of uploaded files | |||
| 2023-12-07 | Samples: Read an save data to db. | Frederick Muriuki Muriithi | |
| 2023-12-07 | Samples: Provide preview feature. | Frederick Muriuki Muriithi | |
| 2023-12-06 | Feature: Upload Samples/Cases | Frederick Muriuki Muriithi | |
| Implements the code enabling the upload of the samples/cases to the database. | |||
| 2023-11-30 | Remove link to non-existent file. | Frederick Muriuki Muriithi | |
| 2023-11-30 | Error logging: Add more details to help with debugging. | Frederick Muriuki Muriithi | |
| 2023-11-30 | Handle duplicate dataset creation error | Frederick Muriuki Muriithi | |
| Notify the user when they try to create a new dataset that has the same name as an existing dataset and give them the chance to fix it before continuing. | |||
| 2023-11-30 | Fix errors caught by pylint and mypy. | Frederick Muriuki Muriithi | |
| 2023-11-28 | Handle generic MySQL errors at the top-level. | Frederick Muriuki Muriithi | |
| 2023-11-28 | Capture, log and handle generic exceptions | Frederick Muriuki Muriithi | |
| Handle any and all unforeseen error conditions gracefully by capturing the exceptions, logging out for debug purposes and providing the user with a generic error page. | |||
| 2023-11-15 | Log out DB errors even when handled | Frederick Muriuki Muriithi | |
| Log out any DB errors that occur to help with tracking and debugging failures. | |||
| 2023-11-15 | UI: Remove 'Full Name' and 'Short Name' fields for study. | Frederick Muriuki Muriithi | |
| 2023-11-15 | UI: Only show GeneChipId and GeneChipName | Frederick Muriuki Muriithi | |
| 2023-11-15 | Linting: Fix linting errors. | Frederick Muriuki Muriithi | |
| 2023-11-15 | Commit changes on query success. | Frederick Muriuki Muriithi | |
| 2023-11-15 | Provide default `AuthorisedUsers` value. | Frederick Muriuki Muriithi | |
| 2023-10-18 | Explicitly specify columns | Frederick Muriuki Muriithi | |
| Due to possible schema differences between local small db on development computer and those on CI/CD and Production, explicitly specify the columns being operated on by the queries. | |||
| 2023-10-16 | Indicate progress for data insert. | Frederick Muriuki Muriithi | |
| 2023-10-16 | Link study to ProbeSetFreeze table. | Frederick Muriuki Muriithi | |
| 2023-01-17 | Add link back to index page on abort or errors | Frederick Muriuki Muriithi | |
| 2023-01-17 | upload: Enable cancelling an upload. | Frederick Muriuki Muriithi | |
| 2022-12-23 | Help: Provide some help content for end user | Frederick Muriuki Muriithi | |
| 2022-11-16 | ui: provide error messaging if file is not selected. | Frederick Muriuki Muriithi | |
| 2022-11-16 | ui: Don't show upload progress indicator if file is not selected. | Frederick Muriuki Muriithi | |
| 2022-11-16 | ui: Only display the "alert-success" green on completion | Frederick Muriuki Muriithi | |
| * To avoid confusion, only display the "alert-success" green on completion of the parsing process. While parsing, if there are no errors, then display the "No errors found so far" message without the green colour. | |||
| 2022-11-12 | Accept plain text (text/plain) files | Frederick Muriuki Muriithi | |
| 2022-09-08 | Use sys.executable and setup default environment | Frederick Muriuki Muriithi | |
| Use the sys.executable to get the correct python binary to run the external processes, and setup the environment to point to the correct PYTHONPATH. | |||
| 2022-08-31 | Commit missing files. | Frederick Muriuki Muriithi | |
| 2022-08-31 | Provide database port where relevant. | Frederick Muriuki Muriithi | |
| 2022-08-31 | Check connections outside app factory | Frederick Muriuki Muriithi | |
| Check the connections in the wsgi.py file, outside of the `create_app` application factory to avoid issues with tests failing due to test app not initialising because of missing connections in the test environment. | |||
| 2022-08-05 | Update job status. Display stdout and stderr outputs | Frederick Muriuki Muriithi | |
| * Display the status of the job, as it is running * Display STDERR output if an error occurs * Display STDOUT output as job is running and on successful completion of the job | |||
| 2022-08-04 | Implement data insertion | Frederick Muriuki Muriithi | |
| - Hook up external data insertion script to webserver code - Provide rudimentary status indication - Generalise some job creation details | |||
| 2022-08-04 | Fix typo: 'species' -> 'speciesid' | Frederick Muriuki Muriithi | |
| 2022-08-04 | UX: Enable selecting radio by clicking anywhere on the row | Frederick Muriuki Muriithi | |
| Ease the selection of a radio button by allowing the user to click on any of the table cells that are in the same row as the radio button of concern. | |||
| 2022-07-19 | Check connections before launching | Frederick Muriuki Muriithi | |
| * qc_app/__init__.py (refactor): Check connection before launching the application * qc_app/check_connections.py (new file): Add code to check connections * qc_app/db_utils.py (refactor): enable passing the database uri as an argument to the connection creation function. * scripts/worker.py (refactor): Use new code to check for redis connection. | |||
| 2022-07-19 | Rework: Use generic worker script to launch process | Frederick Muriuki Muriithi | |
| Use the generic worker script as the interface for launching external processes. | |||
| 2022-07-19 | Rename file validation script | Frederick Muriuki Muriithi | |
| As preparation for building a new generic worker script, this commit renames the file validation script from 'worker.py' to 'validate_file.py' so as to ensure the name conforms better to what the script does. | |||
| 2022-07-19 | Implement confirmation stage | Frederick Muriuki Muriithi | |
| Provide user with a confirmation stage where they can verify all the data before inserting into the database. | |||
| 2022-07-19 | Enable creation of new dataset | Frederick Muriuki Muriithi | |
| Enable the user to create a new dataset should the need arise. A few extra fixes were done, such as: - Provide list of average methods to choose from - Provide input elements for some expected fields - Add a new confirmation step before doing the actual data update | |||
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index : gn-uploader | |
| gn-uploader: Data uploader for GeneNetwork |
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