gn-uploader - gn-uploader: Data uploader for GeneNetwork

Age	Commit message (Collapse)	Author
2022-07-07	Provide selection for GeneChips	Frederick Muriuki Muriithi
	The GeneChipId value is required for the data being inserted, so this commit provides the UI to enable selection of the chip.
2022-07-06	Implement UI for dataset selection	Frederick Muriuki Muriithi
	As part of updating the database with the new data, there is a need to select the appropriate dataset that the data belongs to, and this commit provides the UI to assist the user do that.
2022-06-28	Check for inconsistent columns	Frederick Muriuki Muriithi
	The number columns in each contents line should be equal to the nember of columns in the header line.
2022-06-13	Add upload progress indicator	Frederick Muriuki Muriithi

2022-06-10	Enable upload of zipfiles	Frederick Muriuki Muriithi

2022-06-02	Enable user abortion of file parsing	Frederick Muriuki Muriithi
	Enable the user to abort the background parsing of the file.
2022-06-02	Add an error display to the progress status report	Frederick Muriuki Muriithi
	Enable the progress status page to show all the errors found at any point during the processing of the file.
2022-05-20	Use standard-error rather than standard_error for consistency	Frederick Muriuki Muriithi
	The CLI scripts use "standard-error" so update the web version to fit in with that.
2022-05-20	Handle errors	Frederick Muriuki Muriithi
	Implement code to handle errors in the processing of files.
2022-05-19	Update Web-UI: use new error collection paradigm	Frederick Muriuki Muriithi
	- README.org: document how to run scripts manually - manifest.scm: remove python-rq as a dependency - qc_app/jobs.py: rework job launching and processing - qc_app/parse.py: use reworked job processing - qc_app/templates/job_progress.html: display progress correctly - qc_app/templates/parse_results.html: display final results - scripts/worker.py: new worker script
2022-04-26	Fix issues caught processing the jobs	Frederick Muriuki Muriithi
	* Create and push the application context for the worker functions * Fix the update of meta fields
2022-04-26	Queue file parsing jobs	Frederick Muriuki Muriithi
	Enable the queuing of file parsing jobs, since the files could be really large and take a long time to parse and present results. * etc/default_config.py: Add default config for redis server * manifest.scm: Add redis, and rq as dependencies * qc_app/__init__.py * qc_app/jobs.py: module to hold utilities for management of the jobs * qc_app/parse.py: Enqueue the job - extract file-parsing code to callable function * qc_app/templates/base.html: Enable addition of extra meta tags * qc_app/templates/job_progress.html: template to display job progress * qc_app/templates/no_such_job.html: template to indicate when a job id is invalid * quality_control/parsing.py: Add the total size parsed so far
2022-04-25	Implement file upload	Frederick Muriuki Muriithi

2022-04-25	UI: Add index page and basic styling	Frederick Muriuki Muriithi
	Add template(s) for the index page and some basic styling to get started with.