| Age | Commit message (Expand) | Author |
|---|---|---|
| 2024-02-14 | Provide endpoint to send data to. | Frederick Muriuki Muriithi |
| 2024-02-14 | Extract upload progress indication code...* Extract the UI elements and code for indicating upload progress into separate, reusable "modules". * Fix bugs arising from changes. | Frederick Muriuki Muriithi |
| 2024-02-13 | Provide nice UI progress indicators. | Frederick Muriuki Muriithi |
| 2024-02-12 | Check for errors in the 'phenose' file. | Frederick Muriuki Muriithi |
| 2024-02-12 | Check for errors in the 'pheno' file. | Frederick Muriuki Muriithi |
| 2024-02-12 | Improve error display for generic errors | Frederick Muriuki Muriithi |
| 2024-02-12 | Collect and display errors on 'geno' files in the bundle. | Frederick Muriuki Muriithi |
| 2024-02-12 | UI: Provide QC successful results page | Frederick Muriuki Muriithi |
| 2024-02-12 | Retrive and display generic bundle errors...Implement the first QC check for generic errors e.g. missing files in bundle, etc. Display retrieved errors on UI. | Frederick Muriuki Muriithi |
| 2024-02-12 | R/qtl2 QC: Set up scaffolding for QC UI...Set up the scaffolding for the flows and UI that will be used when running QC against the uploaded R/qtl2 bundle. This will be fleshed out later, and the UI is likely to change somewhat, down the line. | Frederick Muriuki Muriithi |
| 2024-02-07 | Fix error display: setup correct error class | Frederick Muriuki Muriithi |
| 2024-02-07 | Set up limits for inputs in UI | Frederick Muriuki Muriithi |
| 2024-02-06 | Bug: Fix routing issues...Fix the routing issues that were redirecting the flow to the wrong endpoints. | Frederick Muriuki Muriithi |
| 2024-02-05 | Run QC on the 'geno' file in R/qtl2 bundle. | Frederick Muriuki Muriithi |
| 2024-02-05 | Do general bundle validation and show errors...* Display any and all errors on the UI * Move `validate_bundle` to QC module and refactor to use `missing_files` | Frederick Muriuki Muriithi |
| 2024-02-05 | Update UI documentation...Improve the UI documentation by making it more explicit what each section deals with to help aleviate confusion of what the different features do. | Frederick Muriuki Muriithi |
| 2024-01-22 | UI: Fix some UI bugs. | Frederick Muriuki Muriithi |
| 2024-01-22 | scripts: Pass in logger to get detailed updates. | Frederick Muriuki Muriithi |
| 2024-01-22 | UI: Show progress of R/qtl2 bundle processing. | Frederick Muriuki Muriithi |
| 2024-01-20 | Fetch sample/case names from database...Fetch the sample/case names from the database rather than from a static file in the repository. Issue: https://issues.genenetwork.org/issues/quality-control/read-samples-from-database-by-species | Frederick Muriuki Muriithi |
| 2024-01-19 | UI: Present entry point for R/qtl2 bundles upload. | Frederick Muriuki Muriithi |
| 2024-01-18 | UI: Display summary information. | Frederick Muriuki Muriithi |
| 2024-01-18 | UI: Create new ProbeSet dataset. | Frederick Muriuki Muriithi |
| 2024-01-18 | UI: Select from existing ProbeSet datasets. | Frederick Muriuki Muriithi |
| 2024-01-18 | Create new ProbeSet study. | Frederick Muriuki Muriithi |
| 2024-01-17 | UI: Select ProbeSet study. | Frederick Muriuki Muriithi |
| 2024-01-17 | UI: Implement creating new genotype datasets. | Frederick Muriuki Muriithi |
| 2024-01-17 | UI: Initialise summary page. | Frederick Muriuki Muriithi |
| 2024-01-17 | Enable selecting from existing genotype datasets. | Frederick Muriuki Muriithi |
| 2024-01-16 | UI: Create UI for creating a new Genotype dataset. | Frederick Muriuki Muriithi |
| 2024-01-16 | UI: Create UI to select from existing genotype datasets. | Frederick Muriuki Muriithi |
| 2024-01-16 | Create intermediate step...We do not have the option to modify the request and then redirect with the modification in place. To go around that, this commit creates an intermediate step that informs the user of their progress, while allowing us to store the filename for future steps. | Frederick Muriuki Muriithi |
| 2024-01-08 | Upload R/qtl2 zip bundle and check for errors. | Frederick Muriuki Muriithi |
| 2024-01-08 | Implement "POST" path for "select-population" route. | Frederick Muriuki Muriithi |
| 2024-01-05 | UI to select the population under which the data falls. | Frederick Muriuki Muriithi |
| 2024-01-05 | Initialise R/qtl2 bundle upload path...Initialise the upload path for R/qtl2 bundles. This commit adds UI that allows the user to select from existing species, before proceeding to the next stage. | Frederick Muriuki Muriithi |
| 2023-12-20 | Add favicon...Add a favicon to reduce noise in the logs due to failed requests. | Frederick Muriuki Muriithi |
| 2023-12-19 | Commit missing templates. | Frederick Muriuki Muriithi |
| 2023-12-07 | Samples: Read an save data to db. | Frederick Muriuki Muriithi |
| 2023-12-07 | Samples: Provide preview feature. | Frederick Muriuki Muriithi |
| 2023-12-06 | Feature: Upload Samples/Cases...Implements the code enabling the upload of the samples/cases to the database. | Frederick Muriuki Muriithi |
| 2023-11-30 | Remove link to non-existent file. | Frederick Muriuki Muriithi |
| 2023-11-30 | Handle duplicate dataset creation error...Notify the user when they try to create a new dataset that has the same name as an existing dataset and give them the chance to fix it before continuing. | Frederick Muriuki Muriithi |
| 2023-11-28 | Capture, log and handle generic exceptions...Handle any and all unforeseen error conditions gracefully by capturing the exceptions, logging out for debug purposes and providing the user with a generic error page. | Frederick Muriuki Muriithi |
| 2023-11-15 | UI: Remove 'Full Name' and 'Short Name' fields for study. | Frederick Muriuki Muriithi |
| 2023-11-15 | UI: Only show GeneChipId and GeneChipName | Frederick Muriuki Muriithi |
| 2023-10-16 | Indicate progress for data insert. | Frederick Muriuki Muriithi |
| 2023-01-17 | Add link back to index page on abort or errors | Frederick Muriuki Muriithi |
| 2023-01-17 | upload: Enable cancelling an upload. | Frederick Muriuki Muriithi |
| 2022-12-23 | Help: Provide some help content for end user | Frederick Muriuki Muriithi |
 |
index : gn-uploader | |
| gn-uploader: Data uploader for GeneNetwork |
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