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2022-07-07Provide selection for GeneChipsFrederick Muriuki Muriithi
The GeneChipId value is required for the data being inserted, so this commit provides the UI to enable selection of the chip.
2022-06-15Setup test fixtures and initial tests for web-UIFrederick Muriuki Muriithi
2022-05-19Update Web-UI: use new error collection paradigmFrederick Muriuki Muriithi
- README.org: document how to run scripts manually - manifest.scm: remove python-rq as a dependency - qc_app/jobs.py: rework job launching and processing - qc_app/parse.py: use reworked job processing - qc_app/templates/job_progress.html: display progress correctly - qc_app/templates/parse_results.html: display final results - scripts/worker.py: new worker script
2022-04-28Use sqlite3 to save the jobs metadataFrederick Muriuki Muriithi
* Use sqlite to save the jobs metadata and enable UI update of the progress for large files
2022-04-27Implement command-line interface for QC of filesFrederick Muriuki Muriithi
2022-04-26Queue file parsing jobsFrederick Muriuki Muriithi
Enable the queuing of file parsing jobs, since the files could be really large and take a long time to parse and present results. * etc/default_config.py: Add default config for redis server * manifest.scm: Add redis, and rq as dependencies * qc_app/__init__.py * qc_app/jobs.py: module to hold utilities for management of the jobs * qc_app/parse.py: Enqueue the job - extract file-parsing code to callable function * qc_app/templates/base.html: Enable addition of extra meta tags * qc_app/templates/job_progress.html: template to display job progress * qc_app/templates/no_such_job.html: template to indicate when a job id is invalid * quality_control/parsing.py: Add the total size parsed so far
2022-04-20Add scaffolding for web appFrederick Muriuki Muriithi
Add a basic scaffolding for the web interface to the quality-control application.
2022-04-11Set up initial, failing tests for cell valuesFrederick Muriuki Muriithi