gn-uploader - gn-uploader: Data uploader for GeneNetwork

Age	Commit message (Collapse)	Author
2024-03-21	Improve channel definition documentation.	Frederick Muriuki Muriithi

2024-02-28	tests: test with just the message - don't include markup	Frederick Muriuki Muriithi
	Markup can, and will change as improvements are made, but the error messages will not change that often, plus that is what we want to actually test for, not the markup.
2024-02-28	tests: Update unit tests: remove use of obsoleted functions.	Frederick Muriuki Muriithi

2024-02-16	Documentation: Add section on configurations.	Frederick Muriuki Muriithi

2024-01-23	Tests: Use prefixes in tests rather than starting redis server	Frederick Muriuki Muriithi
	It's easier, and more robust to put the data under a prefix within a redis database rather than try to run a redis server, especially within the test environment. This commit updates the tests to use a redis prefix instead.
2024-01-08	Add channel authorization.	Frederick Muriuki Muriithi

2024-01-03	Refactor: Extract potentially reusable functions	Frederick Muriuki Muriithi
	The processing of transposed files is probably going to be very similar, thus the need to extract some reusable code from the geno-file-specific function in preparation.
2024-01-02	Cleanup: Fix linting and typing errors and update docs.	Frederick Muriuki Muriithi

2022-11-16	ui: Only display the "alert-success" green on completion	Frederick Muriuki Muriithi
	* To avoid confusion, only display the "alert-success" green on completion of the parsing process. While parsing, if there are no errors, then display the "No errors found so far" message without the green colour.
2022-07-07	Rework guix.scm to use latest commit	Frederick Muriuki Muriithi
	Rather than specifying a specific commit in the development guix.scm this commit has the system automatically get the latest commit and use that for building the package object.
2022-06-15	Fix linting and type errors	Frederick Muriuki Muriithi

2022-05-27	Update documentation	Frederick Muriuki Muriithi

2022-05-27	Revert "Accept exponential notation for standard-error files"	Frederick Muriuki Muriithi
	This reverts commit 960c1a5b831d8761a3e1716f86ded4cc5b67eea0. After meeting with Arthur, it was confirmed that the CSV file should not have values in the exponential notation.
2022-05-20	Accept exponential notation for standard-error files	Frederick Muriuki Muriithi

2022-05-19	Update Web-UI: use new error collection paradigm	Frederick Muriuki Muriithi
	- README.org: document how to run scripts manually - manifest.scm: remove python-rq as a dependency - qc_app/jobs.py: rework job launching and processing - qc_app/parse.py: use reworked job processing - qc_app/templates/job_progress.html: display progress correctly - qc_app/templates/parse_results.html: display final results - scripts/worker.py: new worker script
2022-05-11	Document generating and running qc for/with docker	Frederick Muriuki Muriithi

2022-05-09	Update documentation and license	Frederick Muriuki Muriithi
	Add documentation on how to run the development version of the GeneNetwork Quality Control application. Update the license to the agpl3+ license used by genenetwork3
2022-04-27	Enable managing app via setup.py	Frederick Muriuki Muriithi
	While the application is developed with GNU Guix, the end user might not be using it, and therefore, this commit provides a way for the user to install the application with the usual python package management systems.
2022-04-27	Implement command-line interface for QC of files	Frederick Muriuki Muriithi

2022-04-25	docs: update documentation on checks	Frederick Muriuki Muriithi

2022-04-11	Set up initial, failing tests for cell values	Frederick Muriuki Muriithi

2022-04-11	Initialise the QC repository	Frederick Muriuki Muriithi