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2024-02-28tests: test with just the message - don't include markupFrederick Muriuki Muriithi
Markup can, and will change as improvements are made, but the error messages will not change that often, plus that is what we want to actually test for, not the markup.
2024-02-28tests: Update unit tests: remove use of obsoleted functions.Frederick Muriuki Muriithi
2024-02-16Documentation: Add section on configurations.Frederick Muriuki Muriithi
2024-01-23Tests: Use prefixes in tests rather than starting redis serverFrederick Muriuki Muriithi
It's easier, and more robust to put the data under a prefix within a redis database rather than try to run a redis server, especially within the test environment. This commit updates the tests to use a redis prefix instead.
2024-01-08Add channel authorization.Frederick Muriuki Muriithi
2024-01-03Refactor: Extract potentially reusable functionsFrederick Muriuki Muriithi
The processing of transposed files is probably going to be very similar, thus the need to extract some reusable code from the geno-file-specific function in preparation.
2024-01-02Cleanup: Fix linting and typing errors and update docs.Frederick Muriuki Muriithi
2022-11-16ui: Only display the "alert-success" green on completionFrederick Muriuki Muriithi
* To avoid confusion, only display the "alert-success" green on completion of the parsing process. While parsing, if there are no errors, then display the "No errors found so far" message without the green colour.
2022-07-07Rework guix.scm to use latest commitFrederick Muriuki Muriithi
Rather than specifying a specific commit in the development guix.scm this commit has the system automatically get the latest commit and use that for building the package object.
2022-06-15Fix linting and type errorsFrederick Muriuki Muriithi
2022-05-27Update documentationFrederick Muriuki Muriithi
2022-05-27Revert "Accept exponential notation for standard-error files"Frederick Muriuki Muriithi
This reverts commit 960c1a5b831d8761a3e1716f86ded4cc5b67eea0. After meeting with Arthur, it was confirmed that the CSV file should not have values in the exponential notation.
2022-05-20Accept exponential notation for standard-error filesFrederick Muriuki Muriithi
2022-05-19Update Web-UI: use new error collection paradigmFrederick Muriuki Muriithi
- README.org: document how to run scripts manually - manifest.scm: remove python-rq as a dependency - qc_app/jobs.py: rework job launching and processing - qc_app/parse.py: use reworked job processing - qc_app/templates/job_progress.html: display progress correctly - qc_app/templates/parse_results.html: display final results - scripts/worker.py: new worker script
2022-05-11Document generating and running qc for/with dockerFrederick Muriuki Muriithi
2022-05-09Update documentation and licenseFrederick Muriuki Muriithi
Add documentation on how to run the development version of the GeneNetwork Quality Control application. Update the license to the agpl3+ license used by genenetwork3
2022-04-27Enable managing app via setup.pyFrederick Muriuki Muriithi
While the application is developed with GNU Guix, the end user might not be using it, and therefore, this commit provides a way for the user to install the application with the usual python package management systems.
2022-04-27Implement command-line interface for QC of filesFrederick Muriuki Muriithi
2022-04-25docs: update documentation on checksFrederick Muriuki Muriithi
2022-04-11Set up initial, failing tests for cell valuesFrederick Muriuki Muriithi
2022-04-11Initialise the QC repositoryFrederick Muriuki Muriithi