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gn-uploader: Data uploader for GeneNetwork
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2024-04-12
Consistently check for possibly non-existent data
Frederick Muriuki Muriithi
2024-04-12
Provide tissue-id details to probeset dataset templates
Frederick Muriuki Muriithi
2024-04-10
linting: Fix linting errors.
Frederick Muriuki Muriithi
2024-04-10
logging: Set up logging in wsgi.py
Frederick Muriuki Muriithi
2024-04-10
Gracefully handle all `werkzeug.exceptions` errors.
Frederick Muriuki Muriithi
2024-04-10
Use application logger, not root logger.
Frederick Muriuki Muriithi
2024-04-08
Add logging for IntegrityError
Frederick Muriuki Muriithi
2024-04-08
Refactor: Make error-checking more robust
Frederick Muriuki Muriithi
2024-04-08
Fix issues caught by integration tests.
Frederick Muriuki Muriithi
2024-04-08
Fix pylint and mypy errors.
Frederick Muriuki Muriithi
2024-04-08
bug: UI: Provide better error messaging.
Frederick Muriuki Muriithi
2024-04-08
bug: Handle IntegrityError: Studies cannot have same name.
Frederick Muriuki Muriithi
2024-04-08
bug: Check that Genotype dataset name is not duplicated.
Frederick Muriuki Muriithi
2024-04-05
Handle exceptions creating ProbeSet datasets.
Frederick Muriuki Muriithi
2024-04-05
Add explicit route for favicon to reduce noise in the logs.
Frederick Muriuki Muriithi
2024-04-04
Remove unused database connection.
Frederick Muriuki Muriithi
2024-04-03
Reduce size of data inserted per query
Frederick Muriuki Muriithi
2024-03-29
Quiet linter.
Frederick Muriuki Muriithi
2024-03-29
Add UI to select/create tissue.
Frederick Muriuki Muriithi
2024-03-22
Notify user if identifiers are not consistent.
Frederick Muriuki Muriithi
2024-03-22
Map names in files to names in database.
Frederick Muriuki Muriithi
2024-03-22
Fix linting issue.
Frederick Muriuki Muriithi
2024-03-21
Improve channel definition documentation.
Frederick Muriuki Muriithi
2024-03-20
Use `url_for` to get icon.
Frederick Muriuki Muriithi
2024-03-20
Fix bug: correctly merge standard-error values in file to data in db
Frederick Muriuki Muriithi
2024-03-19
Set up application logging.
Frederick Muriuki Muriithi
2024-03-19
Add debugging statements to track upload of R/qtl2 bundle.
Frederick Muriuki Muriithi
2024-03-19
Query by `Id` rather than `ProbeFreezeId`
Frederick Muriuki Muriithi
2024-03-15
Move defaults settings into qc_app module.
Frederick Muriuki Muriithi
2024-03-14
Update symbolic link
Frederick Muriuki Muriithi
2024-03-12
Build up correct path to default settings
Frederick Muriuki Muriithi
2024-03-11
Rename module
Frederick Muriuki Muriithi
2024-03-11
Fix package name: gnqc-py to gn-uploader
Frederick Muriuki Muriithi
2024-03-11
Add guix-past as a channel dependency
Frederick Muriuki Muriithi
2024-03-11
Make guix-bioinformatics a dependency for this channel.
Frederick Muriuki Muriithi
2024-03-08
Update packaging and distribution declarations.
Frederick Muriuki Muriithi
2024-03-08
Rename package for guix
Frederick Muriuki Muriithi
2024-03-04
Use `Id` rather than `ProbeFreezeId`.
Frederick Muriuki Muriithi
2024-03-04
Display flash messages correctly.
Frederick Muriuki Muriithi
2024-02-28
tests: test with just the message - don't include markup
Frederick Muriuki Muriithi
2024-02-28
tests: Update unit tests: remove use of obsoleted functions.
Frederick Muriuki Muriithi
2024-02-28
Remove last vestiges of flask's "instance path" configurations.
Frederick Muriuki Muriithi
2024-02-28
Fix bug: fetch from cursor, not return from cursor.execute(…)
load-raw-data-no-parsing
Frederick Muriuki Muriithi
2024-02-27
Remove use of instance path in configurations.
Frederick Muriuki Muriithi
2024-02-21
Check that samples/cases are consistent
Frederick Muriuki Muriithi
2024-02-21
Pass 'filename' value to error checker function.
Frederick Muriuki Muriithi
2024-02-20
Track filename in the errors
Frederick Muriuki Muriithi
2024-02-20
Generalise fetching of samples/cases/individuals.
Frederick Muriuki Muriithi
2024-02-20
Read samples from geno file.
Frederick Muriuki Muriithi
2024-02-20
Read each file separately
Frederick Muriuki Muriithi
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