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gn-uploader: Data uploader for GeneNetwork
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2024-02-05
Retrieve list of all files, and list of missing files
Frederick Muriuki Muriithi
2024-02-05
Update UI documentation
Frederick Muriuki Muriithi
2024-02-02
List file types in a single place for easier reuse
Frederick Muriuki Muriithi
2024-02-02
Ensure control file defaults are set up in code.
Frederick Muriuki Muriithi
2024-02-02
Bug: Specify DictCursor class to return dict-like result
Frederick Muriuki Muriithi
2024-01-24
Checks: Update code and tests to ensure all checks pass.
Frederick Muriuki Muriithi
2024-01-24
redis-prefix: update "upload samples" path
Frederick Muriuki Muriithi
2024-01-24
redis-prefix: Update "insert data" path.
Frederick Muriuki Muriithi
2024-01-24
redis-prefix: Update file validation code
Frederick Muriuki Muriithi
2024-01-23
Update scripts to use redis prefix.
Frederick Muriuki Muriithi
2024-01-23
Add prefix to redis keys
Frederick Muriuki Muriithi
2024-01-23
Tests: Use prefixes in tests rather than starting redis server
Frederick Muriuki Muriithi
2024-01-22
UI: Fix some UI bugs.
Frederick Muriuki Muriithi
2024-01-22
scripts: Pass in logger to get detailed updates.
Frederick Muriuki Muriithi
2024-01-22
UI: Show progress of R/qtl2 bundle processing.
Frederick Muriuki Muriithi
2024-01-20
Fetch sample/case names from database
Frederick Muriuki Muriithi
2024-01-19
scripts: Process R/qtl2 bundle
Frederick Muriuki Muriithi
2024-01-19
UI: Present entry point for R/qtl2 bundles upload.
Frederick Muriuki Muriithi
2024-01-18
UI: Display summary information.
Frederick Muriuki Muriithi
2024-01-18
UI: Create new ProbeSet dataset.
Frederick Muriuki Muriithi
2024-01-18
UI: Select from existing ProbeSet datasets.
Frederick Muriuki Muriithi
2024-01-18
Create new ProbeSet study.
Frederick Muriuki Muriithi
2024-01-17
UI: Select ProbeSet study.
Frederick Muriuki Muriithi
2024-01-17
UI: Implement creating new genotype datasets.
Frederick Muriuki Muriithi
2024-01-17
UI: Initialise summary page.
Frederick Muriuki Muriithi
2024-01-17
Enable selecting from existing genotype datasets.
Frederick Muriuki Muriithi
2024-01-17
Update flash-messages' categories.
Frederick Muriuki Muriithi
2024-01-16
UI: Create UI for creating a new Genotype dataset.
Frederick Muriuki Muriithi
2024-01-16
UI: Create UI to select from existing genotype datasets.
Frederick Muriuki Muriithi
2024-01-16
Create intermediate step
Frederick Muriuki Muriithi
2024-01-16
Build a sha512 hash from the uploaded file's name and timestamp
Frederick Muriuki Muriithi
2024-01-16
Filter out items with values of `None`.
Frederick Muriuki Muriithi
2024-01-16
Provide defaults for various control variables
Frederick Muriuki Muriithi
2024-01-15
Update imports: `take` was moved to different package.
Frederick Muriuki Muriithi
2024-01-15
Process `na.strings` even for default cases
Frederick Muriuki Muriithi
2024-01-15
Extract common functional tools to separate package.
Frederick Muriuki Muriithi
2024-01-15
Process the `pheno` files.
Frederick Muriuki Muriithi
2024-01-15
Initialise `install_phenos` script.
Frederick Muriuki Muriithi
2024-01-15
Extract common structure into separate modules.
Frederick Muriuki Muriithi
2024-01-11
Update pmap data in the database.
Frederick Muriuki Muriithi
2024-01-11
Update gmap data in the database
Frederick Muriuki Muriithi
2024-01-11
Cleanup linting and typing errors.
Frederick Muriuki Muriithi
2024-01-11
CLI: Require datasetid as an argument.
Frederick Muriuki Muriithi
2024-01-10
Provide convenience functions to avoid subtle call errors
Frederick Muriuki Muriithi
2024-01-10
Cross-reference genotype data to the dataset.
Frederick Muriuki Muriithi
2024-01-10
Insert genotype data.
Frederick Muriuki Muriithi
2024-01-10
Cross-reference individuals to populations.
Frederick Muriuki Muriithi
2024-01-10
Insert any new individuals/samples into the database.
Frederick Muriuki Muriithi
2024-01-10
Insert any new markers
Frederick Muriuki Muriithi
2024-01-10
Make identifier column name explicit
Frederick Muriuki Muriithi
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