aboutsummaryrefslogtreecommitdiff
AgeCommit message (Expand)Author
2024-01-11CLI: Require datasetid as an argument.Frederick Muriuki Muriithi
2024-01-10Provide convenience functions to avoid subtle call errorsFrederick Muriuki Muriithi
2024-01-10Cross-reference genotype data to the dataset.Frederick Muriuki Muriithi
2024-01-10Insert genotype data.Frederick Muriuki Muriithi
2024-01-10Cross-reference individuals to populations.Frederick Muriuki Muriithi
2024-01-10Insert any new individuals/samples into the database.Frederick Muriuki Muriithi
2024-01-10Insert any new markersFrederick Muriuki Muriithi
2024-01-10Make identifier column name explicitFrederick Muriuki Muriithi
2024-01-09WIP: Install genotypes from R/qtl2 bundleFrederick Muriuki Muriithi
2024-01-09Raise exception on reading non-existing fileFrederick Muriuki Muriithi
2024-01-09Fix linting errorsFrederick Muriuki Muriithi
2024-01-09scripts: Log to redisFrederick Muriuki Muriithi
2024-01-08Add channel authorization.Frederick Muriuki Muriithi
2024-01-08Fix errors with types.Frederick Muriuki Muriithi
2024-01-08Upload R/qtl2 zip bundle and check for errors.Frederick Muriuki Muriithi
2024-01-08Implement "create-population" route.Frederick Muriuki Muriithi
2024-01-08Implement "POST" path for "select-population" route.Frederick Muriuki Muriithi
2024-01-08Use extracted functions and fix bugsFrederick Muriuki Muriithi
2024-01-08Extract common database functions into a separate package.Frederick Muriuki Muriithi
2024-01-05Improve styling.Frederick Muriuki Muriithi
2024-01-05UI to select the population under which the data falls.Frederick Muriuki Muriithi
2024-01-05Initialise R/qtl2 bundle upload pathFrederick Muriuki Muriithi
2024-01-05Add missing import.Frederick Muriuki Muriithi
2024-01-05Revert "QC: Check for only one decimal place."Frederick Muriuki Muriithi
2024-01-04Parse sex information from R/qtl bundle.Frederick Muriuki Muriithi
2024-01-04Parse cross information from R/qtl2 bundle.Frederick Muriuki Muriithi
2024-01-04Process sex and cross information data in "covar" files.Frederick Muriuki Muriithi
2024-01-04Rename test moduleFrederick Muriuki Muriithi
2024-01-04Parse multiple files with same file key.Frederick Muriuki Muriithi
2024-01-04Test parsing of multiple files for single keyFrederick Muriuki Muriithi
2024-01-04Add tests for parsing cross information (covar) files.Frederick Muriuki Muriithi
2024-01-04Add tests for parsing 'phenocovar' files.Frederick Muriuki Muriithi
2024-01-04Rename test module.Frederick Muriuki Muriithi
2024-01-03Use generic parser. Remove obsoleted functions.Frederick Muriuki Muriithi
2024-01-03Parse founder_geno files. Generalise parsing files.Frederick Muriuki Muriithi
2024-01-03Add tests for `founder_geno` parsing.Frederick Muriuki Muriithi
2024-01-03Parse the phenotype data from the R/qtl2 bundle.Frederick Muriuki Muriithi
2024-01-03Rename argument and add documentation to functions.Frederick Muriuki Muriithi
2024-01-03Extract processing of transposed files into reusable function.Frederick Muriuki Muriithi
2024-01-03Refactor: Extract potentially reusable functionsFrederick Muriuki Muriithi
2024-01-02Inherit from `gnqc-py` in `guix-bioinformatics`.Frederick Muriuki Muriithi
2024-01-02Cleanup guix definitions in preparation for deployment.Frederick Muriuki Muriithi
2024-01-02Mark tests as unit tests.Frederick Muriuki Muriithi
2024-01-02Abstract away non-transposed file processingFrederick Muriuki Muriithi
2024-01-02Cleanup: Fix linting and typing errors and update docs.Frederick Muriuki Muriithi
2023-12-28Rework parsing of transposed geno files.Frederick Muriuki Muriithi
2023-12-28Handle transposed geno files.Frederick Muriuki Muriithi
2023-12-27Tests: Test parsing of non-transposed geno files.Frederick Muriuki Muriithi
2023-12-27Tests: Test parsing of pmap files. Merge testing of map files.Frederick Muriuki Muriithi
2023-12-27Tests: Add tests for parsing gmap files.Frederick Muriuki Muriithi
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-05 13:01:25 +0000