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gn-uploader
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rewrite-rqtl2-qc
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gn-uploader: Data uploader for GeneNetwork
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2024-01-15
Extract common functional tools to separate package.
Frederick Muriuki Muriithi
2024-01-15
Process the `pheno` files.
Frederick Muriuki Muriithi
2024-01-15
Initialise `install_phenos` script.
Frederick Muriuki Muriithi
2024-01-15
Extract common structure into separate modules.
Frederick Muriuki Muriithi
2024-01-11
Update pmap data in the database.
Frederick Muriuki Muriithi
2024-01-11
Update gmap data in the database
Frederick Muriuki Muriithi
2024-01-11
Cleanup linting and typing errors.
Frederick Muriuki Muriithi
2024-01-11
CLI: Require datasetid as an argument.
Frederick Muriuki Muriithi
2024-01-10
Provide convenience functions to avoid subtle call errors
Frederick Muriuki Muriithi
2024-01-10
Cross-reference genotype data to the dataset.
Frederick Muriuki Muriithi
2024-01-10
Insert genotype data.
Frederick Muriuki Muriithi
2024-01-10
Cross-reference individuals to populations.
Frederick Muriuki Muriithi
2024-01-10
Insert any new individuals/samples into the database.
Frederick Muriuki Muriithi
2024-01-10
Insert any new markers
Frederick Muriuki Muriithi
2024-01-10
Make identifier column name explicit
Frederick Muriuki Muriithi
2024-01-09
WIP: Install genotypes from R/qtl2 bundle
Frederick Muriuki Muriithi
2024-01-09
Raise exception on reading non-existing file
Frederick Muriuki Muriithi
2024-01-09
Fix linting errors
Frederick Muriuki Muriithi
2024-01-09
scripts: Log to redis
Frederick Muriuki Muriithi
2024-01-08
Add channel authorization.
Frederick Muriuki Muriithi
2024-01-08
Fix errors with types.
Frederick Muriuki Muriithi
2024-01-08
Upload R/qtl2 zip bundle and check for errors.
Frederick Muriuki Muriithi
2024-01-08
Implement "create-population" route.
Frederick Muriuki Muriithi
2024-01-08
Implement "POST" path for "select-population" route.
Frederick Muriuki Muriithi
2024-01-08
Use extracted functions and fix bugs
Frederick Muriuki Muriithi
2024-01-08
Extract common database functions into a separate package.
Frederick Muriuki Muriithi
2024-01-05
Improve styling.
Frederick Muriuki Muriithi
2024-01-05
UI to select the population under which the data falls.
Frederick Muriuki Muriithi
2024-01-05
Initialise R/qtl2 bundle upload path
Frederick Muriuki Muriithi
2024-01-05
Add missing import.
Frederick Muriuki Muriithi
2024-01-05
Revert "QC: Check for only one decimal place."
Frederick Muriuki Muriithi
2024-01-04
Parse sex information from R/qtl bundle.
Frederick Muriuki Muriithi
2024-01-04
Parse cross information from R/qtl2 bundle.
Frederick Muriuki Muriithi
2024-01-04
Process sex and cross information data in "covar" files.
Frederick Muriuki Muriithi
2024-01-04
Rename test module
Frederick Muriuki Muriithi
2024-01-04
Parse multiple files with same file key.
Frederick Muriuki Muriithi
2024-01-04
Test parsing of multiple files for single key
Frederick Muriuki Muriithi
2024-01-04
Add tests for parsing cross information (covar) files.
Frederick Muriuki Muriithi
2024-01-04
Add tests for parsing 'phenocovar' files.
Frederick Muriuki Muriithi
2024-01-04
Rename test module.
Frederick Muriuki Muriithi
2024-01-03
Use generic parser. Remove obsoleted functions.
Frederick Muriuki Muriithi
2024-01-03
Parse founder_geno files. Generalise parsing files.
Frederick Muriuki Muriithi
2024-01-03
Add tests for `founder_geno` parsing.
Frederick Muriuki Muriithi
2024-01-03
Parse the phenotype data from the R/qtl2 bundle.
Frederick Muriuki Muriithi
2024-01-03
Rename argument and add documentation to functions.
Frederick Muriuki Muriithi
2024-01-03
Extract processing of transposed files into reusable function.
Frederick Muriuki Muriithi
2024-01-03
Refactor: Extract potentially reusable functions
Frederick Muriuki Muriithi
2024-01-02
Inherit from `gnqc-py` in `guix-bioinformatics`.
Frederick Muriuki Muriithi
2024-01-02
Cleanup guix definitions in preparation for deployment.
Frederick Muriuki Muriithi
2024-01-02
Mark tests as unit tests.
Frederick Muriuki Muriithi
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