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gn-uploader: Data uploader for GeneNetwork
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2023-12-28
Rework parsing of transposed geno files.
Frederick Muriuki Muriithi
2023-12-28
Handle transposed geno files.
Frederick Muriuki Muriithi
2023-12-27
Tests: Test parsing of non-transposed geno files.
Frederick Muriuki Muriithi
2023-12-27
Tests: Test parsing of pmap files. Merge testing of map files.
Frederick Muriuki Muriithi
2023-12-27
Tests: Add tests for parsing gmap files.
Frederick Muriuki Muriithi
2023-12-25
Generalise to read both genetic and physical maps.
Frederick Muriuki Muriithi
2023-12-25
Read genetic map files
Frederick Muriuki Muriithi
2023-12-20
Read genotype files
Frederick Muriuki Muriithi
2023-12-20
Read R/qtl2 format files
Frederick Muriuki Muriithi
2023-12-20
Add `pyyaml` as a dependency.
Frederick Muriuki Muriithi
2023-12-20
Provide instance_path at client creation.
Frederick Muriuki Muriithi
2023-12-20
Stop relying on "GUIX_ENVIRONMENT" envvar
Frederick Muriuki Muriithi
2023-12-20
Reduce table columns
Frederick Muriuki Muriithi
2023-12-20
Fix ID column key
Frederick Muriuki Muriithi
2023-12-20
Add favicon
Frederick Muriuki Muriithi
2023-12-19
Commit missing templates.
Frederick Muriuki Muriithi
2023-12-19
Bug: Commit population before trying to upload data.
Frederick Muriuki Muriithi
2023-12-18
Samples: Hook-up external async script to upload the samples.
Frederick Muriuki Muriithi
2023-12-14
samples: Create external script and fix some bugs.
Frederick Muriuki Muriithi
2023-12-14
Pass connection to `species_by_id` function.
Frederick Muriuki Muriithi
2023-12-11
samples: Fix bugs in code saving samples to db
Frederick Muriuki Muriithi
2023-12-07
Samples: Read an save data to db.
Frederick Muriuki Muriithi
2023-12-07
Samples: Provide preview feature.
Frederick Muriuki Muriithi
2023-12-06
Feature: Upload Samples/Cases
Frederick Muriuki Muriithi
2023-11-30
Remove link to non-existent file.
Frederick Muriuki Muriithi
2023-11-30
Error logging: Add more details to help with debugging.
Frederick Muriuki Muriithi
2023-11-30
Bug: Fix insertion error
Frederick Muriuki Muriithi
2023-11-30
Handle duplicate dataset creation error
Frederick Muriuki Muriithi
2023-11-30
Fix errors caught by pylint and mypy.
Frederick Muriuki Muriithi
2023-11-28
Handle generic MySQL errors at the top-level.
Frederick Muriuki Muriithi
2023-11-28
Capture, log and handle generic exceptions
Frederick Muriuki Muriithi
2023-11-24
QC: Check for only one decimal place.
Frederick Muriuki Muriithi
2023-11-15
Log out DB errors even when handled
Frederick Muriuki Muriithi
2023-11-15
Remove debugging statement.
Frederick Muriuki Muriithi
2023-11-15
Bug: Insert ProbeSets before average data and cross-refs
Frederick Muriuki Muriithi
2023-11-15
UI: Remove 'Full Name' and 'Short Name' fields for study.
Frederick Muriuki Muriithi
2023-11-15
UI: Only show GeneChipId and GeneChipName
Frederick Muriuki Muriithi
2023-11-15
mypy: Fix typing errors.
Frederick Muriuki Muriithi
2023-11-15
Linting: Fix linting errors.
Frederick Muriuki Muriithi
2023-11-15
Commit changes on query success.
Frederick Muriuki Muriithi
2023-11-15
Provide default `AuthorisedUsers` value.
Frederick Muriuki Muriithi
2023-10-30
Prevent overwrite. Avoid inserting same probeset multiple times.
Frederick Muriuki Muriithi
2023-10-18
Link to `ProbeSet.Id` in XRef Table
Frederick Muriuki Muriithi
2023-10-18
Explicitly specify columns
Frederick Muriuki Muriithi
2023-10-16
Fix bug: Insert ProbeSets if they do not exist.
Frederick Muriuki Muriithi
2023-10-16
Fix bug: Provide the platform_id to `insert_means`
Frederick Muriuki Muriithi
2023-10-16
Fix bug: parsing fields from query.
Frederick Muriuki Muriithi
2023-10-16
Indicate progress for data insert.
Frederick Muriuki Muriithi
2023-10-16
Link study to ProbeSetFreeze table.
Frederick Muriuki Muriithi
2023-01-17
Add link back to index page on abort or errors
Frederick Muriuki Muriithi
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