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-{%extends "base.html"%}
-{%from "flash_messages.html" import flash_messages%}
-
-{%block title%}Upload R/qtl2 Bundle{%endblock%}
-
-{%block contents%}
-<h2 class="heading">Select Genotypes Dataset</h2>
-
-<div class="row">
- <p>Your R/qtl2 files bundle contains a "geno" specification. You will
- therefore need to select from one of the existing Genotype datasets or
- create a new one.</p>
- <p>This is the dataset where your data will be organised under.</p>
-</div>
-
-<div class="row">
- <form id="frm-upload-rqtl2-bundle"
- action="{{url_for('expression-data.rqtl2.select_geno_dataset',
- species_id=species.SpeciesId,
- population_id=population.InbredSetId)}}"
- method="POST"
- enctype="multipart/form-data">
- <legend class="heading">select from existing genotype datasets</legend>
-
- <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
- <input type="hidden" name="population_id"
- value="{{population.InbredSetId}}" />
- <input type="hidden" name="rqtl2_bundle_file"
- value="{{rqtl2_bundle_file}}" />
-
- {{flash_messages("error-rqtl2-select-geno-dataset")}}
-
- <div class="form-group">
- <legend>Datasets</legend>
- <label for="select:geno-datasets" class="form-label">Dataset</label>
- <select id="select:geno-datasets"
- name="geno-dataset-id"
- required="required"
- {%if datasets | length == 0%}
- disabled="disabled"
- {%endif%}
- class="form-control"
- aria-describedby="help-geno-dataset-select-dataset">
- <option value="">Select dataset</option>
- {%for dset in datasets%}
- <option value="{{dset['Id']}}">{{dset["Name"]}} ({{dset["FullName"]}})</option>
- {%endfor%}
- </select>
- <span id="help-geno-dataset-select-dataset" class="form-text text-muted">
- Select from the existing genotype datasets for species
- {{species.SpeciesName}} ({{species.FullName}}).
- </span>
- </div>
-
- <button type="submit" class="btn btn-primary">select dataset</button>
- </form>
-</div>
-
-<div class="row">
- <p style="color:#FE3535; padding-left:20em; font-weight:bolder;">OR</p>
-</div>
-
-<div class="row">
- <form id="frm-upload-rqtl2-bundle"
- action="{{url_for('expression-data.rqtl2.create_geno_dataset',
- species_id=species.SpeciesId,
- population_id=population.InbredSetId)}}"
- method="POST"
- enctype="multipart/form-data">
- <legend class="heading">create a new genotype dataset</legend>
-
- <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
- <input type="hidden" name="population_id"
- value="{{population.InbredSetId}}" />
- <input type="hidden" name="rqtl2_bundle_file"
- value="{{rqtl2_bundle_file}}" />
-
- {{flash_messages("error-rqtl2-create-geno-dataset")}}
-
- <div class="form-group">
- <label for="txt:dataset-name" class="form-label">Name</label>
- <input type="text"
- id="txt:dataset-name"
- name="dataset-name"
- maxlength="100"
- required="required"
- class="form-control"
- aria-describedby="help-geno-dataset-name" />
- <span id="help-geno-dataset-name" class="form-text text-muted">
- Provide the new name for the genotype dataset, e.g. "BXDGeno"
- </span>
- </div>
-
- <div class="form-group">
- <label for="txt:dataset-fullname" class="form-label">Full Name</label>
- <input type="text"
- id="txt:dataset-fullname"
- name="dataset-fullname"
- required="required"
- maxlength="100"
- class="form-control"
- aria-describedby="help-geno-dataset-fullname" />
-
- <span id="help-geno-dataset-fullname" class="form-text text-muted">
- Provide a longer name that better describes the genotype dataset, e.g.
- "BXD Genotypes"
- </span>
- </div>
-
- <div class="form-group">
- <label for="txt:dataset-shortname" class="form-label">Short Name</label>
- <input type="text"
- id="txt:dataset-shortname"
- name="dataset-shortname"
- maxlength="100"
- class="form-control"
- aria-describedby="help-geno-dataset-shortname" />
-
- <span id="help-geno-dataset-shortname" class="form-text text-muted">
- Provide a short name for the genotype dataset. This is optional. If not
- provided, we'll default to the same value as the "Name" above.
- </span>
- </div>
-
- <div class="form-group">
- <input type="checkbox"
- id="chk:dataset-public"
- name="dataset-public"
- checked="checked"
- class="form-check"
- aria-describedby="help-geno-datasent-public" />
- <label for="chk:dataset-public" class="form-check-label">Public?</label>
-
- <span id="help-geno-dataset-public" class="form-text text-muted">
- Specify whether the dataset will be available publicly. Check to make the
- dataset publicly available and uncheck to limit who can access the dataset.
- </span>
- </div>
-
- <button type="submit" class="btn btn-primary">create new dataset</button>
- </form>
-</div>
-
-{%endblock%}