diff options
Diffstat (limited to 'uploader/phenotypes')
| -rw-r--r-- | uploader/phenotypes/views.py | 39 |
1 files changed, 5 insertions, 34 deletions
diff --git a/uploader/phenotypes/views.py b/uploader/phenotypes/views.py index 834a450..4a9df8b 100644 --- a/uploader/phenotypes/views.py +++ b/uploader/phenotypes/views.py @@ -13,7 +13,6 @@ from logging import INFO, ERROR, DEBUG, FATAL, CRITICAL, WARNING from urllib.parse import urljoin, urlparse, ParseResult, urlunparse, urlencode import datetime -from datetime import timedelta from redis import Redis from pymonad.either import Left @@ -25,9 +24,7 @@ from gn_libs import sqlite3 from gn_libs import jobs as gnlibs_jobs from gn_libs.jobs.jobs import JobNotFound from gn_libs.mysqldb import database_connection -from gn_libs import monadic_requests as mrequests -from authlib.jose import jwt from flask import (flash, request, url_for, @@ -47,8 +44,9 @@ from uploader import session from uploader.files import save_file#, fullpath from uploader.ui import make_template_renderer from uploader.oauth2.client import oauth2_post +from uploader.oauth2.tokens import request_token from uploader.authorisation import require_login -from uploader.oauth2 import jwks, client as oauth2client +from uploader.oauth2 import client as oauth2client from uploader.route_utils import generic_select_population from uploader.datautils import safe_int, enumerate_sequence from uploader.species.models import all_species, species_by_id @@ -676,37 +674,10 @@ def load_data_to_database( return redirect(url_for( "background-jobs.job_status", job_id=load_job["job_id"])) - issued = datetime.datetime.now() - jwtkey = jwks.newest_jwk_with_rotation( - jwks.jwks_directory(app, "UPLOADER_SECRETS"), - int(app.config["JWKS_ROTATION_AGE_DAYS"])) - return mrequests.post( - urljoin(oauth2client.authserver_uri(), "auth/token"), - json={ - "grant_type": "urn:ietf:params:oauth:grant-type:jwt-bearer", - "scope": oauth2client.SCOPE, - "assertion": jwt.encode( - header={ - "alg": "RS256", - "typ": "JWT", - "kid": jwtkey.as_dict()["kid"] - }, - payload={ - "iss": str(oauth2client.oauth2_clientid()), - "sub": str(session.user_details()["user_id"]), - "aud": urljoin(oauth2client.authserver_uri(), - "auth/token"), - # TODO: Update expiry time once fix is implemented in - # auth server. - "exp": (issued + timedelta(minutes=5)).timestamp(), - "nbf": int(issued.timestamp()), - "iat": int(issued.timestamp()), - "jti": str(uuid.uuid4()) - }, - key=jwtkey).decode("utf8"), - "client_id": oauth2client.oauth2_clientid() - } + return request_token( + token_uri=urljoin(oauth2client.authserver_uri(), "auth/token"), + user_id=session.user_details()["user_id"] ).then( lambda token: gnlibs_jobs.initialise_job( conn, |