diff options
Diffstat (limited to 'tests/r_qtl')
| -rw-r--r-- | tests/r_qtl/test_r_qtl2_qc.py | 19 |
1 files changed, 12 insertions, 7 deletions
diff --git a/tests/r_qtl/test_r_qtl2_qc.py b/tests/r_qtl/test_r_qtl2_qc.py index d12172e..05db30e 100644 --- a/tests/r_qtl/test_r_qtl2_qc.py +++ b/tests/r_qtl/test_r_qtl2_qc.py @@ -124,9 +124,12 @@ def test_missing_files(filepath, expected): ("tests/r_qtl/test_files/test_geno.zip", tuple()), ("tests/r_qtl/test_files/geno_with_missing_genotypes.zip", - (InvalidValue(1, "AXR-1", "X", "Invalid value 'X'. Expected one of ('L', 'C')."), - InvalidValue(2, "EC.480C", "Y", "Invalid value 'Y'. Expected one of ('L', 'C')."), - InvalidValue(6, "HH.335C-Col/PhyA", "H", f"Invalid value 'H'. Expected one of ('L', 'C')."))))) + (InvalidValue("geno", 1, "AXR-1", "X", + "Invalid value 'X'. Expected one of ('L', 'C')."), + InvalidValue("geno", 2, "EC.480C", + "Y", "Invalid value 'Y'. Expected one of ('L', 'C')."), + InvalidValue("geno", 6, "HH.335C-Col/PhyA", "H", + f"Invalid value 'H'. Expected one of ('L', 'C')."))))) def test_geno_errors(filepath, expected): """ GIVEN: A R/qtl2 bundle @@ -145,10 +148,12 @@ def test_geno_errors(filepath, expected): ("tests/r_qtl/test_files/pheno_without_errors.zip", tuple()), ("tests/r_qtl/test_files/pheno_with_errors.zip", - (InvalidValue(1, "liver", "61.92", ("Invalid value '61.92'. Expected numerical value " - "with at least 3 decimal places.")), - InvalidValue(2, "spleen", "brrr", ("Invalid value 'brrr'. Expected numerical value " - "with at least 3 decimal places.")))))) + (InvalidValue("pheno", 1, "liver", "61.92", ( + "Invalid value '61.92'. Expected numerical value " + "with at least 3 decimal places.")), + InvalidValue("pheno", 2, "spleen", "brrr", ( + "Invalid value 'brrr'. Expected numerical value " + "with at least 3 decimal places.")))))) def test_pheno_errors(filepath, expected): """ GIVEN: A R/qtl2 bundle |