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Diffstat (limited to 'tests/r_qtl/test_r_qtl2_map_files.py')
-rw-r--r--tests/r_qtl/test_r_qtl2_map_files.py40
1 files changed, 20 insertions, 20 deletions
diff --git a/tests/r_qtl/test_r_qtl2_map_files.py b/tests/r_qtl/test_r_qtl2_map_files.py
index 5c8ca6a..3427ffb 100644
--- a/tests/r_qtl/test_r_qtl2_map_files.py
+++ b/tests/r_qtl/test_r_qtl2_map_files.py
@@ -11,32 +11,32 @@ from r_qtl import r_qtl2 as rqtl2
"relpath,mapfiletype,expected",
(("tests/r_qtl/test_files/test_gmap.zip",
"gmap",
- ({"marker": "PVV4", "chr": "1", "pos": "0.000000"},
- {"marker": "AXR-1", "chr": "1", "pos": "6.250674"},
- {"marker": "HH.335C-Col/PhyA", "chr": "1", "pos": "9.303868"},
- {"marker": "EC.480C", "chr": "1", "pos": "12.577629"},
- {"marker": "EC.66C", "chr": "1", "pos": "18.392830"})),
+ ({"id": "PVV4", "chr": "1", "pos": "0.000000"},
+ {"id": "AXR-1", "chr": "1", "pos": "6.250674"},
+ {"id": "HH.335C-Col/PhyA", "chr": "1", "pos": "9.303868"},
+ {"id": "EC.480C", "chr": "1", "pos": "12.577629"},
+ {"id": "EC.66C", "chr": "1", "pos": "18.392830"})),
("tests/r_qtl/test_files/test_gmap_transposed.zip",
"gmap",
- ({"marker": "PVV4", "chr": "1", "pos": "0.000000"},
- {"marker": "AXR-1", "chr": "1", "pos": "6.250674"},
- {"marker": "HH.335C-Col/PhyA", "chr": "1", "pos": "9.303868"},
- {"marker": "EC.480C", "chr": "1", "pos": "12.577629"},
- {"marker": "EC.66C", "chr": "1", "pos": "18.392830"})),
+ ({"id": "PVV4", "chr": "1", "pos": "0.000000"},
+ {"id": "AXR-1", "chr": "1", "pos": "6.250674"},
+ {"id": "HH.335C-Col/PhyA", "chr": "1", "pos": "9.303868"},
+ {"id": "EC.480C", "chr": "1", "pos": "12.577629"},
+ {"id": "EC.66C", "chr": "1", "pos": "18.392830"})),
("tests/r_qtl/test_files/test_pmap.zip",
"pmap",
- ({"marker": "D1Mit18", "chr": "1", "pos": "52.418656"},
- {"marker": "D1Mit80", "chr": "1", "pos": "86.377953"},
- {"marker": "D1Mit17", "chr": "1", "pos": "189.571337"},
- {"marker": "D2Mit379", "chr": "2", "pos": "37.451062"},
- {"marker": "D2Mit75", "chr": "2", "pos": "80.584782"})),
+ ({"id": "D1Mit18", "chr": "1", "pos": "52.418656"},
+ {"id": "D1Mit80", "chr": "1", "pos": "86.377953"},
+ {"id": "D1Mit17", "chr": "1", "pos": "189.571337"},
+ {"id": "D2Mit379", "chr": "2", "pos": "37.451062"},
+ {"id": "D2Mit75", "chr": "2", "pos": "80.584782"})),
("tests/r_qtl/test_files/test_pmap_transposed.zip",
"pmap",
- ({"marker": "D1Mit18", "chr": "1", "pos": "52.418656"},
- {"marker": "D1Mit80", "chr": "1", "pos": "86.377953"},
- {"marker": "D1Mit17", "chr": "1", "pos": "189.571337"},
- {"marker": "D2Mit379", "chr": "2", "pos": "37.451062"},
- {"marker": "D2Mit75", "chr": "2", "pos": "80.584782"}))))
+ ({"id": "D1Mit18", "chr": "1", "pos": "52.418656"},
+ {"id": "D1Mit80", "chr": "1", "pos": "86.377953"},
+ {"id": "D1Mit17", "chr": "1", "pos": "189.571337"},
+ {"id": "D2Mit379", "chr": "2", "pos": "37.451062"},
+ {"id": "D2Mit75", "chr": "2", "pos": "80.584782"}))))
def test_parse_map_files(relpath, mapfiletype, expected):
"""
GIVEN: A path to a zip file, `relpath` and the type of the map file,