diff options
Diffstat (limited to 'scripts/rqtl2')
| -rw-r--r-- | scripts/rqtl2/install_genotypes.py | 4 |
1 files changed, 4 insertions, 0 deletions
diff --git a/scripts/rqtl2/install_genotypes.py b/scripts/rqtl2/install_genotypes.py index 6ae3788..3b9e987 100644 --- a/scripts/rqtl2/install_genotypes.py +++ b/scripts/rqtl2/install_genotypes.py @@ -121,6 +121,7 @@ def cross_reference_genotypes(dbconn: mdb.Connection, def install_genotypes(dbconn: mdb.Connection, speciesid: int, populationid: int, + datasetid: int, rqtl2bundle: Path) -> int: """Load any existing genotypes into the database.""" count = 0 @@ -190,6 +191,8 @@ if __name__ == "__main__": help="Species to which bundle relates.") parser.add_argument("populationid", help="Population to group data under") + parser.add_argument("datasetid", + help="The dataset to which the data belongs.") parser.add_argument("rqtl2bundle", help="Path to R/qtl2 bundle zip file.", type=Path) @@ -226,6 +229,7 @@ if __name__ == "__main__": return install_genotypes(dbconn, args.speciesid, args.populationid, + args.datasetid, args.rqtl2bundle) sys.exit(main()) |