diff options
Diffstat (limited to 'scripts/rqtl2')
| -rw-r--r-- | scripts/rqtl2/install_phenos.py | 5 |
1 files changed, 3 insertions, 2 deletions
diff --git a/scripts/rqtl2/install_phenos.py b/scripts/rqtl2/install_phenos.py index 4fdf428..5c25866 100644 --- a/scripts/rqtl2/install_phenos.py +++ b/scripts/rqtl2/install_phenos.py @@ -54,12 +54,13 @@ def insert_probeset_data(dbconn: mdb.Connection, data = tuple( {**row, "psdid": lastid + idx} for idx, row in enumerate( - ({ + (item for item in ({ "sampleid": sampleids[innerrow["id"]], "value": innerrow[pheno], "pheno": pheno } for innerrow in phenos for pheno in - (key for key in innerrow.keys() if key != "id")), + (key for key in innerrow.keys() if key != "id")) + if item["value"] is not None), start=1)) cursor.executemany( "INSERT INTO ProbeSetData(Id, StrainId, value) " |