diff options
Diffstat (limited to 'scripts/rqtl2/install_phenos.py')
| -rw-r--r-- | scripts/rqtl2/install_phenos.py | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/scripts/rqtl2/install_phenos.py b/scripts/rqtl2/install_phenos.py index 5c25866..21b5f00 100644 --- a/scripts/rqtl2/install_phenos.py +++ b/scripts/rqtl2/install_phenos.py @@ -10,8 +10,8 @@ import MySQLdb as mdb from MySQLdb.cursors import DictCursor from scripts.rqtl2.entry import build_main -from scripts.cli_parser import init_cli_parser from scripts.rqtl2.cli_parser import add_common_arguments +from scripts.cli_parser import init_cli_parser, add_global_data_arguments from r_qtl import r_qtl2 as rqtl2 @@ -143,9 +143,9 @@ if __name__ == "__main__": def cli_args(): """Process command-line arguments for `install_phenos`""" - parser = init_cli_parser( + parser = add_global_data_arguments(init_cli_parser( "install_genotypes", - "Parse genotypes from R/qtl2 bundle into the database.") + "Parse genotypes from R/qtl2 bundle into the database.")) parser.add_argument( "platformid", @@ -156,7 +156,7 @@ if __name__ == "__main__": return parser.parse_args() main = build_main( - cli_args, + cli_args(), lambda dbconn, args: install_pheno_files(dbconn, args.speciesid, args.platformid, |