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Diffstat (limited to 'scripts/process_rqtl2_bundle.py')
| -rw-r--r-- | scripts/process_rqtl2_bundle.py | 4 |
1 files changed, 4 insertions, 0 deletions
diff --git a/scripts/process_rqtl2_bundle.py b/scripts/process_rqtl2_bundle.py index 4efc3e0..8b7a0fb 100644 --- a/scripts/process_rqtl2_bundle.py +++ b/scripts/process_rqtl2_bundle.py @@ -94,7 +94,9 @@ def process_bundle(dbconn: mdb.Connection, if has_geno_file(thejob): logger.info("Processing geno files.") genoexit = install_genotypes( + rconn, dbconn, + f"{rprefix}:{jobid}", argparse.Namespace( speciesid=meta["speciesid"], populationid=meta["populationid"], @@ -110,7 +112,9 @@ def process_bundle(dbconn: mdb.Connection, if has_pheno_file(thejob): phenoexit = install_pheno_files( + rconn, dbconn, + f"{rprefix}:{jobid}", argparse.Namespace( speciesid=meta["speciesid"], platformid=meta["platformid"], |