diff options
Diffstat (limited to 'qc_app/upload/rqtl2.py')
| -rw-r--r-- | qc_app/upload/rqtl2.py | 25 |
1 files changed, 24 insertions, 1 deletions
diff --git a/qc_app/upload/rqtl2.py b/qc_app/upload/rqtl2.py index 0b446ac..7609fa9 100644 --- a/qc_app/upload/rqtl2.py +++ b/qc_app/upload/rqtl2.py @@ -34,6 +34,7 @@ from qc_app.db.datasets import ( probeset_study_by_id, probeset_create_study, + probeset_dataset_by_id, probeset_create_dataset, probeset_datasets_by_study, probeset_studies_by_species_and_population) @@ -512,8 +513,30 @@ def select_dataset_info(species_id: int, population_id: int): datasets=probeset_datasets_by_study( conn, int(form["probe-study-id"])), avgmethods=averaging_methods(conn)) + probeset_study = probeset_study_by_id( + conn, int(form["probe-study-id"])) + probeset_dataset = probeset_dataset_by_id( + conn, int(form["probe-dataset-id"])) return render_template("rqtl2/summary-info.html", species=species, population=population, - geno_dataset=geno_dataset) + geno_dataset=geno_dataset, + probe_study=probeset_study, + probe_dataset=probeset_dataset) + + + +@rqtl2.route(("/upload/species/<int:species_id>/population/<int:population_id>" + "/rqtl2-bundle/confirm-bundle-details"), + methods=["POST"]) +def confirm_bundle_details(species_id: int, population_id: int): + """Confirm the details and trigger R/qtl2 bundle processing...""" + with database_connection(app.config["SQL_URI"]) as conn: + error = check_errors( + conn, "species", "population", "rqtl2_bundle_file", "geno-dataset", + "probe-study-id", "probe-dataset-id") + if bool(error): + return error + + raise NotImplementedError |