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-rw-r--r--qc_app/templates/dbupdate_hidden_fields.html14
-rw-r--r--qc_app/templates/select_study.html55
2 files changed, 57 insertions, 12 deletions
diff --git a/qc_app/templates/dbupdate_hidden_fields.html b/qc_app/templates/dbupdate_hidden_fields.html
new file mode 100644
index 0000000..cdebeab
--- /dev/null
+++ b/qc_app/templates/dbupdate_hidden_fields.html
@@ -0,0 +1,14 @@
+{%macro hidden_fields(filename, filetype):%}
+
+<!-- {{kwargs}}: mostly for accessing the kwargs in macro -->
+
+<input type="hidden" name="filename" value="{{filename}}" />
+<input type="hidden" name="filetype" value="{{filetype}}" />
+{%if kwargs.get("species"):%}
+<input type="hidden" name="species" value="{{species}}" />
+{%endif%}
+{%if kwargs.get("genechipid"):%}
+<input type="hidden" name="genechipid" value="{{genechipid}}" />
+{%endif%}
+
+{%endmacro%}
diff --git a/qc_app/templates/select_study.html b/qc_app/templates/select_study.html
index 8d7a98b..e4b629c 100644
--- a/qc_app/templates/select_study.html
+++ b/qc_app/templates/select_study.html
@@ -1,4 +1,5 @@
{%extends "base.html"%}
+{%from "dbupdate_hidden_fields.html" import hidden_fields%}
{%block title%}Select Dataset{%endblock%}
@@ -14,10 +15,7 @@
id="select-platform-form" data-genechips="{{genechips_data}}"
class="two-col-sep-col1">
<legend>Select from existing study</legend>
- <input type="hidden" name="filename" value="{{filename}}" />
- <input type="hidden" name="filetype" value="{{filetype}}" />
- <input type="hidden" name="species" value="{{species}}" />
- <input type="hidden" name="genechipid" value="{{genechipid}}" />
+ {{hidden_fields(filename, filetype, species=species, genechipid=genechipid)}}
<fieldset>
<label for="study" class="form-col-1">study:</label>
@@ -39,19 +37,28 @@
<p class="two-col-sep-separator">OR</p>
- <form method="POST" action="{{url_for('dbinsert.select_study')}}"
+ <form method="POST" action="{{url_for('dbinsert.create_study')}}"
id="select-platform-form" data-genechips="{{genechips_data}}"
class="two-col-sep-col2">
+ {%with messages = get_flashed_messages(with_categories=true)%}
+ {%if messages:%}
+ <ul>
+ {%for category, message in messages:%}
+ <li class="{{category}}">{{message}}</li>
+ {%endfor%}
+ </ul>
+ {%endif%}
+ {%endwith%}
<legend>Create new study</legend>
- <input type="hidden" name="filename" value="{{filename}}" />
- <input type="hidden" name="filetype" value="{{filetype}}" />
- <input type="hidden" name="species" value="{{species}}" />
- <input type="hidden" name="genechipid" value="{{genechipid}}" />
+ {{hidden_fields(filename, filetype, species=species, genechipid=genechipid)}}
<fieldset>
<label for="studyname" class="form-col-1">name:</label>
<input type="text" id="studyname" name="studyname" class="form-col-2"
- required="required" />
+ required="required"
+ {%if studyname:%}
+ value="{{studyname}}"
+ {%endif%} />
</fieldset>
<fieldset>
@@ -68,13 +75,37 @@
<fieldset>
<label for="group" class="form-col-1">group:</label>
- <select id="group" name="inbredsetid" class="form-col-2">
+ <select id="group" name="inbredsetid" class="form-col-2"
+ required="required">
+ <option value="">Select group</option>
+ {%for family in groups:%}
+ <optgroup label="{{family}}">
+ {%for group in groups[family]:%}
+ <option value="{{group['InbredSetId']}}"
+ {%if group["InbredSetId"] == selected_group:%}
+ selected="selected"
+ {%endif%}>
+ {{group["FullName"]}}
+ </option>
+ {%endfor%}
+ </optgroup>
+ {%endfor%}
</select>
</fieldset>
<fieldset>
<label for="tissue" class="form-col-1">tissue:</label>
- <select id="tissue" name="tissueid" class="form-col-2">
+ <select id="tissue" name="tissueid" class="form-col-2"
+ required="required">
+ <option value="">Select type</option>
+ {%for tissue in tissues:%}
+ <option value="{{tissue['TissueId']}}"
+ {%if tissue["TissueId"] == selected_tissue:%}
+ selected="selected"
+ {%endif%}>
+ {{tissue["Name"]}}
+ </option>
+ {%endfor%}
</select>
</fieldset>