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-rw-r--r--qc_app/templates/index.html35
1 files changed, 32 insertions, 3 deletions
diff --git a/qc_app/templates/index.html b/qc_app/templates/index.html
index 2db6048..e534bcb 100644
--- a/qc_app/templates/index.html
+++ b/qc_app/templates/index.html
@@ -1,9 +1,11 @@
{%extends "base.html"%}
-{%block title%}Upload File{%endblock%}
+{%block title%}Data Upload{%endblock%}
{%block contents%}
-<h1 class="heading">upload file</h1>
+<h1 class="heading">data upload</h1>
+
+<h2>Expression Data</h2>
<div id="explainer">
<p>This application assumes that you are familiar with the basics of data
@@ -26,7 +28,7 @@
<form action="{{url_for('entry.upload_file')}}"
method="POST" enctype="multipart/form-data">
- <legend class="heading">upload file</legend>
+ <legend class="heading">upload expression data</legend>
{%with messages = get_flashed_messages(with_categories=True) %}
{%if messages %}
<div class="alerts">
@@ -81,6 +83,33 @@
</button>
</form>
</div>
+
+<h2>samples/cases</h2>
+
+<div>
+ <p>For the expression data above, you need the samples/cases in your file to
+ already exist in the GeneNetwork database. If there are any samples that do
+ not already exist the upload of the expression data will fail.</p>
+ <p>This section gives you the opportunity to upload any missing samples</p>
+</div>
+
+<form method="POST" action="{{url_for('samples.select_species')}}">
+ <legend class="heading">upload samples</legend>
+ <fieldset>
+ <label for="select:species">Species</label>
+ <select id="select:species" name="species_id" required="required">
+ <option value="">Select species</option>
+ {%for spec in species%}
+ <option value="{{spec.SpeciesId}}">{{spec.MenuName}}</option>
+ {%endfor%}
+ </select>
+ </fieldset>
+
+ <fieldset>
+ <input type="submit" value="submit" class="btn btn-main form-col-2" />
+ </fieldset>
+</form>
+
{%endblock%}