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Diffstat (limited to 'README.org')
-rw-r--r-- | README.org | 12 |
1 files changed, 12 insertions, 0 deletions
@@ -58,6 +58,18 @@ To check for correct type usage in the application, run: *** Command-Line Version +Clone this repository +#+BEGIN_SRC shell + git clone http://git.genenetwork.org/fredmanglis/gnqc_py.git +#+END_SRC +then install the application +#+BEGIN_SRC shell + $ python3 -m venv .venv + $ source .venv/bin/activate + (.venv) $ pip install . +#+END_SRC + + To run qc against a file, the syntax is: #+BEGIN_SRC shell python3 -m qc [--strainsfile <strainsfile-path>] [--verbose] <filetype> <filepath> |