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| author | Frederick Muriuki Muriithi | 2024-11-22 12:16:28 -0600 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2024-11-22 12:16:28 -0600 |
| commit | 8a84c4d6762446e5fdf9f9121f539c89419ae6a0 (patch) | |
| tree | 0c4d175767bdfb24d83a7f0c15e0ab677e00ebba /scripts/process_rqtl2_bundle.py | |
| parent | 82fb92db448f1985b821193bcfdee72d512e27bb (diff) | |
| download | gn-uploader-8a84c4d6762446e5fdf9f9121f539c89419ae6a0.tar.gz | |
Use gn-libs code for db connection.
Use the code in gn-libs to connect to the database, rather than a
local module.
Diffstat (limited to 'scripts/process_rqtl2_bundle.py')
| -rw-r--r-- | scripts/process_rqtl2_bundle.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/scripts/process_rqtl2_bundle.py b/scripts/process_rqtl2_bundle.py index ade9862..4efc3e0 100644 --- a/scripts/process_rqtl2_bundle.py +++ b/scripts/process_rqtl2_bundle.py @@ -11,6 +11,7 @@ from logging import Logger, getLogger, StreamHandler import MySQLdb as mdb from redis import Redis +from gn_libs.mysqldb import database_connection from functional_tools import take @@ -19,7 +20,6 @@ import r_qtl.r_qtl2_qc as rqc import r_qtl.exceptions as rqe from uploader import jobs -from uploader.db_utils import database_connection from uploader.check_connections import check_db, check_redis from scripts.cli_parser import init_cli_parser |