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authorFrederick Muriuki Muriithi2023-12-06 13:00:53 +0300
committerFrederick Muriuki Muriithi2023-12-06 13:00:53 +0300
commit493f8fbe747650a4fbac2e0b153ad0074b4f91e4 (patch)
tree578fce7f9548c4a850a02b5817865e5fcb73d007 /qc_app/templates/samples/upload-samples.html
parent968fc27c54099ec1ed5d1770925aed98013ecf55 (diff)
downloadgn-uploader-493f8fbe747650a4fbac2e0b153ad0074b4f91e4.tar.gz
Feature: Upload Samples/Cases
Implements the code enabling the upload of the samples/cases to the database.
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+{%extends "base.html"%}
+{%from "flash_messages.html" import flash_messages%}
+
+{%block title%}Upload Samples{%endblock%}
+
+{%block css%}
+<style type="text/css">
+ #form-samples {
+ background-color: #D1D1D1;
+ }
+ #form-samples fieldset:nth-child(odd){
+ background-color: white;
+ }
+</style>
+{%endblock%}
+
+{%block contents%}
+<h1 class="heading">upload samples</h1>
+
+{{flash_messages("alert-success")}}
+
+<p>You can now upload a character-separated value (CSV) file that contains
+ details about your samples. The CSV file should have the following fields:
+ <dl>
+ <dt>Name</dt>
+ <dd>The primary name for the sample</dd>
+
+ <dt>Name2</dt>
+ <dd>A secondary name for the sample. This can simply be the same as
+ <strong>Name</strong> above. This field <strong>MUST</strong> contain a
+ value.</dd>
+
+ <dt>Symbol</dt>
+ <dd>A symbol for the sample. Can be an empty field.</dd>
+
+ <dt>Alias</dt>
+ <dd>An alias for the sample. Can be an empty field.</dd>
+ </dl>
+ </p>
+
+<form id="form-samples"
+ method="POST"
+ action="#"
+ enctype="multipart/form-data">
+ <legend class="heading">upload samples</legend>
+ <fieldset>
+ <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
+ <label class="form-col-1">species:</label>
+ <label class="form-col-2">{{species.SpeciesName}} [{{species.MenuName}}]</label>
+ </fieldset>
+
+ <fieldset>
+ <input type="hidden" name="inbredset_id" value="{{population.InbredSetId}}" />
+ <label class="form-col-1">grouping/population:</label>
+ <label class="form-col-2">{{population.Name}} [{{population.FullName}}]</label>
+ </fieldset>
+
+ <fieldset>
+ <label for="select:separator" class="form-col-1">field separator</label>
+ <select id="select:separator"
+ name="separator"
+ required="required"
+ class="form-col-2">
+ <option value="">Select separator for your file</option>
+ <option value="&#x0009;">TAB</option>
+ <option value="&#x0020;">Space</option>
+ <option value=",">Comma</option>
+ <option value=";">Semicolon</option>
+ <option value="other">Other</option>
+ </select>
+ <input type="text" name="other_separator" class="form-col-2" />
+ <label class="form-col-2">
+ This is the character that separates the fields in your CSV file. If you
+ select "<strong>Other</strong>", then you must provide the separator in
+ the text field provided.
+ </label>
+ </fieldset>
+
+ <fieldset>
+ <label for="txt:delimiter" class="form-col-1">field delimiter</label>
+ <input type="text" name="field_delimiter" class="form-col-2" />
+ <label class="form-col-2">
+ If there is a character delimiting the string texts within particular
+ fields in your CSV, provide the character here. This can be left blank if
+ no such delimiters exist in your file.
+ </label>
+ </fieldset>
+
+ <fieldset>
+ <label for="file_upload" class="form-col-1">select file</label>
+ <input type="file" name="samples_file" id="file_upload"
+ accept="text/csv, text/tab-separated-values"
+ class="form-col-2" />
+ </fieldset>
+
+ <fieldset>
+ <input type="submit"
+ value="upload samples file"
+ class="btn btn-main form-col-2" />
+ </fieldset>
+</form>
+
+{%endblock%}
+
+
+{%block javascript%}
+{%endblock%}