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| author | Frederick Muriuki Muriithi | 2022-04-27 19:06:45 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2022-04-27 19:14:37 +0300 |
| commit | aadd9aa5dd4c552b573828ddac581a8b7064b0e2 (patch) | |
| tree | fbf17e017af4f736ec5ea797cd777396768decfe /README.org | |
| parent | 903af1c0b1f2cc695ea4e0c31438f9205571d15d (diff) | |
| download | gn-uploader-aadd9aa5dd4c552b573828ddac581a8b7064b0e2.tar.gz | |
Enable managing app via setup.py
While the application is developed with GNU Guix, the end user might
not be using it, and therefore, this commit provides a way for the
user to install the application with the usual python package
management systems.
Diffstat (limited to 'README.org')
| -rw-r--r-- | README.org | 12 |
1 files changed, 12 insertions, 0 deletions
@@ -58,6 +58,18 @@ To check for correct type usage in the application, run: *** Command-Line Version +Clone this repository +#+BEGIN_SRC shell + git clone http://git.genenetwork.org/fredmanglis/gnqc_py.git +#+END_SRC +then install the application +#+BEGIN_SRC shell + $ python3 -m venv .venv + $ source .venv/bin/activate + (.venv) $ pip install . +#+END_SRC + + To run qc against a file, the syntax is: #+BEGIN_SRC shell python3 -m qc [--strainsfile <strainsfile-path>] [--verbose] <filetype> <filepath> |