aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorFrederick Muriuki Muriithi2024-06-13 12:27:25 -0500
committerFrederick Muriuki Muriithi2024-06-13 12:27:25 -0500
commit31fb2794ffd4b17be35a2e122a8c6605aebaf65b (patch)
tree28ce29d5ae36558eb6b0b2c3bf9d05c93c65c01a
parent0a8fdbf4084c064c6839e6283781ede09983e742 (diff)
downloadgn-uploader-31fb2794ffd4b17be35a2e122a8c6605aebaf65b.tar.gz
Update the help text.
-rw-r--r--qc_app/templates/data_review.html24
1 files changed, 16 insertions, 8 deletions
diff --git a/qc_app/templates/data_review.html b/qc_app/templates/data_review.html
index 7ac01ba..b7528fd 100644
--- a/qc_app/templates/data_review.html
+++ b/qc_app/templates/data_review.html
@@ -5,7 +5,7 @@
{%block contents%}
<h1 class="heading">data review</h1>
-<div id="explainer">
+<div class="row">
<h2 id="data-concerns">Data Concerns</h2>
<p>The following are some of the requirements that the data in your file
<strong>MUST</strong> fulfil before it is considered valid for this system:
@@ -19,11 +19,17 @@
all other lines in the file.</li>
<li>Each heading value in the first row MUST appear in the first row
<strong>ONE AND ONLY ONE</strong> time</li>
- <li>The strain headers in your first row will be against a source of truth
- (<a href="https://gitlab.com/fredmanglis/gnqc_py/-/blob/main/etc/strains.csv"
- title="list of expected strains">see strains.csv [1.7M]</a>).<br />
- Pick the strain names from the <strong>'Name'</strong> and
- <strong>'Name2'</strong> fields.</li>
+ <li>The sample/cases (previously 'strains') headers in your first row will be
+ against those in the <a href="https://genenetwork.org"
+ title="Link to the GeneNetwork service">
+ GeneNetwork</a> database.<br />
+ <small class="text-muted">
+ If you encounter an error saying your sample(s)/case(s) do not exist
+ in the GeneNetwork database, then you will have to use the
+ <a href="{{url_for('samples.select_species')}}"
+ title="Upload samples/cases feature">Upload Samples/Cases</a>
+ option on this system to upload them.
+ </small>
</ul>
</li>
@@ -44,14 +50,16 @@
<li>when checking a standard error file decimal numbers must have six or
greater decimal places to the right of the decimal point.</li>
<li>there must be a number to the left side of the decimal place
- (e.g. 0.55555 is allowed but .55555 is not).<li>
+ (e.g. 0.55555 is allowed but .55555 is not).</li>
</ul>
</li>
</ol>
</li>
</ol>
+</div>
+
-
+<div class="row">
<h2 id="file-types">Supported File Types</h2>
We support the following file types: