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| author | Frederick Muriuki Muriithi | 2024-06-13 12:27:25 -0500 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2024-06-13 12:27:25 -0500 |
| commit | 31fb2794ffd4b17be35a2e122a8c6605aebaf65b (patch) | |
| tree | 28ce29d5ae36558eb6b0b2c3bf9d05c93c65c01a | |
| parent | 0a8fdbf4084c064c6839e6283781ede09983e742 (diff) | |
| download | gn-uploader-31fb2794ffd4b17be35a2e122a8c6605aebaf65b.tar.gz | |
Update the help text.
| -rw-r--r-- | qc_app/templates/data_review.html | 24 |
1 files changed, 16 insertions, 8 deletions
diff --git a/qc_app/templates/data_review.html b/qc_app/templates/data_review.html index 7ac01ba..b7528fd 100644 --- a/qc_app/templates/data_review.html +++ b/qc_app/templates/data_review.html @@ -5,7 +5,7 @@ {%block contents%} <h1 class="heading">data review</h1> -<div id="explainer"> +<div class="row"> <h2 id="data-concerns">Data Concerns</h2> <p>The following are some of the requirements that the data in your file <strong>MUST</strong> fulfil before it is considered valid for this system: @@ -19,11 +19,17 @@ all other lines in the file.</li> <li>Each heading value in the first row MUST appear in the first row <strong>ONE AND ONLY ONE</strong> time</li> - <li>The strain headers in your first row will be against a source of truth - (<a href="https://gitlab.com/fredmanglis/gnqc_py/-/blob/main/etc/strains.csv" - title="list of expected strains">see strains.csv [1.7M]</a>).<br /> - Pick the strain names from the <strong>'Name'</strong> and - <strong>'Name2'</strong> fields.</li> + <li>The sample/cases (previously 'strains') headers in your first row will be + against those in the <a href="https://genenetwork.org" + title="Link to the GeneNetwork service"> + GeneNetwork</a> database.<br /> + <small class="text-muted"> + If you encounter an error saying your sample(s)/case(s) do not exist + in the GeneNetwork database, then you will have to use the + <a href="{{url_for('samples.select_species')}}" + title="Upload samples/cases feature">Upload Samples/Cases</a> + option on this system to upload them. + </small> </ul> </li> @@ -44,14 +50,16 @@ <li>when checking a standard error file decimal numbers must have six or greater decimal places to the right of the decimal point.</li> <li>there must be a number to the left side of the decimal place - (e.g. 0.55555 is allowed but .55555 is not).<li> + (e.g. 0.55555 is allowed but .55555 is not).</li> </ul> </li> </ol> </li> </ol> +</div> + - +<div class="row"> <h2 id="file-types">Supported File Types</h2> We support the following file types: |