gn-transform-databases - Data transformers for GeneNetwork (particularly to RDF)

Age	Commit message (Collapse)	Author
2023-12-20	Set up as Guix channel for CI.	Arun Isaac
	* .guix-channel, .guix/gn-transform-databases-package.scm, guix.scm: New files.
2022-03-09	Rename guix.scm to manifest.scm.	Arun Isaac
	We only have a manifest, not a package definition. So, rename it as such, making `guix shell' invocations briefer. * guix.scm: Rename to manifest.scm. In documentation comments, make `guix shell' implicitly pick up the manifest file. * README.org (Using): Make `guix shell' implicitly pick up the manifest file.
2021-12-20	Add guile-sparql to Guix manifest.	Arun Isaac
	* guix.scm: Add guile-sparql to manifest.
2021-12-20	Upgrade ccwl to latest commit.	Arun Isaac
	* guix.scm (ccwl): Upgrade to commit 51c12b7e58685b70e7cfd9612dac403cf9ee845c.
2021-12-13	Upgrade to bleeding edge (ccwl graphviz).	Arun Isaac
	This fixes a few bugs and brings in new features from (ccwl graphviz). * guix.scm: Import (gnu packages autotools), (guix git-download) and (guix packages). Prefix (gnu packages bioinformatics) imports with guix:. (ccwl): New variable.
2021-12-11	Visualize schema.	Arun Isaac
	* .dir-locals.el (scheme-mode): Indent set-table-columns correctly. * dump.scm: Import (srfi srfi-9 gnu). (%database-name): New variable. (<table>): New type. (tables, string-remove-suffix-ci, human-units, graph->dot, dump-schema): New functions. Invoke dump-schema. * guix.scm: Import (gnu packages bioinformatics). Add ccwl, graphviz and guile-libyaml to the manifest.
2021-12-01	Remove dependency on python-rdflib.	Arun Isaac
	* guix.scm: Remove python-rdflib. (python-berkeleydb, python-rdflib-6): Delete variables.
2021-12-01	Replace guix environment with guix shell.	Arun Isaac
	guix environment is deprecated. * guix.scm: Replace guix environment with guix shell.
2021-11-09	Use upstream guile-dbi and guile-dbd-mysql.	Arun Isaac
	* guix.scm: Do not prefix guix: in importing (gnu packages guile-xyz). (guile-dbi, guile-dbi-bootstrap, guile-dbd-mysql): Delete variables.
2021-09-14	Update python-rdflib package.	Arun Isaac
	* guix.scm: Import (gnu packages dbm), (guix build-system python) and (guix download). (python-berkeleydb, python-rdflib-6): New variables. [mainfest]: Replace python-rdflib with python-rdflib-6. Remove python-urrlib3.
2021-09-14	Update guile-dbi package.	Arun Isaac
	* guix.scm (guile-dbi): Update to 2.1.8. (guile-dbi-bootstrap): Inherit from guile-dbi instead of guix:guile-dbi. Update comments about contributing upstream.
2021-08-27	Initial commit	Arun Isaac