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Data transformers for GeneNetwork (particularly to RDF)
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2023-06-12
Minor identation fix
Munyoki Kilyungi
2023-06-12
Add organization to dataset dump
Munyoki Kilyungi
2023-06-12
Use NCBI taxonomy browser instead of uniprot
Munyoki Kilyungi
2023-06-12
Cast longtext fields to fix broket utf-8 characters
Munyoki Kilyungi
2023-06-12
Remove dead comments
Munyoki Kilyungi
2023-06-12
Remove "^[Nn]one$" from some fields from the InfoFiles table
Munyoki Kilyungi
2023-06-12
Default to InfoFiles with the Dataset being a fallback for citations
Munyoki Kilyungi
2023-06-12
Make ((g/ph)enotype/probeset)Dataset subset of Dataset
Munyoki Kilyungi
2023-05-30
Dump OMIM as a normal string without any annotation
Munyoki Kilyungi
2023-05-30
Fix broken utf-8 strings in abstract field
Munyoki Kilyungi
2023-05-30
Add probeset as an extra prefix
Munyoki Kilyungi
2023-05-30
Delete unused prefixes
Munyoki Kilyungi
2023-05-30
Replace species with inbredSet metadata when dumping info-files
Munyoki Kilyungi
2023-05-30
Only dump public data
Munyoki Kilyungi
2023-05-30
Sanitize a probeset's description
Munyoki Kilyungi
2023-05-30
Update the probeset's identifier(object)
Munyoki Kilyungi
2023-05-30
Make a probeset's tissue multiset
Munyoki Kilyungi
2023-05-30
Make a probeset's alias a multiset
Munyoki Kilyungi
2023-05-30
Move probeset metadata used for a given experiment to it's own dump
Munyoki Kilyungi
2023-05-26
Use a phenotype's abbreviation as it's name
Munyoki Kilyungi
2023-05-26
Make tissue a multi-set during the probeset dump
Munyoki Kilyungi
2023-05-26
Remove some metadata from the probeset dump
Munyoki Kilyungi
2023-05-26
Create a new probesetfreeze dump
Munyoki Kilyungi
2023-05-26
Return an empty string if a dataset doesn't have a name
Munyoki Kilyungi
2023-05-26
Remove unnecessary fields from probeset dump
Munyoki Kilyungi
2023-05-26
Sanitize a generif entry from GN
Munyoki Kilyungi
2023-05-26
Add genotype dump
Munyoki Kilyungi
2023-05-26
Fix broken utf-8 chars when dumping an investigator's names
Munyoki Kilyungi
2023-05-26
Remove an investigator's email/phone from dump for privacy reasons
Munyoki Kilyungi
2023-05-26
Update a dataset's subject identifier to be a gn url
Munyoki Kilyungi
2023-05-26
Annotate createtime field correctly with xsd:date
Munyoki Kilyungi
2023-05-26
Replace dump.scm with separete dumps for several tables
Munyoki Kilyungi