| Age | Commit message (Expand) | Author |
|---|---|---|
| 2023-11-17 | Revert "Make Phenotypy InbredSet classification consistent."•••This reverts commit 092b9b4967133fc5a04d9fbf2255f4ce07dedb8b. | Munyoki Kilyungi |
| 2023-11-17 | Make Phenotypy InbredSet classification consistent.•••* examples/phenotype.scm (phenotypes): Remove "separator" and "proc" args. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-10-20 | Use the correct URL for "gnt:" prefix.•••* examples/phenotype.scm (option-spec): Replace http://genenetwork.org/terms/ with http://genenetwork.org/term/. * examples/publication.scm (option-spec): Ditto. * examples/tissue.scm (option-spec): Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-10-20 | Alias Publication.Id to PublicationId•••Using "(field Publication Id)" will somehow default to PublishXRef.Id. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-10-19 | Use InbredSetCode instead of Name when creating a trait name.•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-10-19 | Check (Publish/Geno)Freeze for InbredSet if NULL in InfoFiles.•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-10-19 | Remove un-necessary WHERE clause when dumping phenotypes.•••* examples/phenotype.scm (phenotypes): Delete "WHERE" clause. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-10-19 | Add missing xkos prefix in phenotype dump.•••* examples/phenotype.scm (with-documentation): Add "xkos:" to prefixes. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-10-17 | Replace skos:prefLabel with rdfs:label for genotypes.•••* examples/genotype.scm (genotypes)[triples]: Replace skos:prefLabel with rdfs:label. | Munyoki Kilyungi |
| 2023-10-16 | Group genotype labels together.•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-10-16 | Add a prefLabel for gnc:Probeset.•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-10-16 | Fix typo.•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-10-03 | Classify pheno/genotype and probeset datasets using dcat:Dataset.•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-09-11 | Add genbank dump.•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-09-11 | Update generif metadata dump.•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-09-11 | Filter out empty symbols when dumping generif metadata.•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-30 | Delete this probeset-data tranform•••* examples/probeset-data.scm: Delete. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-30 | Add an extra alias to InbredSet.InbredSetName•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-30 | Remodel how GeneRIF metadata is transformed•••* examples/generif.scm: Import (ice-9 format). (genewiki-symbols): Transform symbols and their names only. This way there's no need to transform the symbol names in the other names thereby preventing duplication. (gn-genewiki-entries): Use format strings to create the comment blank-node. (ncbi-genewiki-entries): Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-28 | Set string->identifier to defaut to "" sep and string-capitalize•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-28 | Update how generif metadata is dumped•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-28 | Update how strains are dumped•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-28 | Update how genotypes are transformed•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-28 | Add qb: and sdmx-measure: prefixes•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-28 | Update phenotype dump•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-28 | Replace gnc:probeset with gnc:Probeset•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-28 | Update how datasets are dumped•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-28 | Fix typo•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-28 | Replace gnt:belongsToSpecies/Set with xkos:classifiedUnder•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-28 | Replace gnc:Type with gnc:DatasetType•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-28 | Use the correct name for the Species•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-28 | Replace gnt:belongsToSpecies with xkos:classifiedUnder•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-28 | Re-introduce gnt:shortName•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-28 | Rename file•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-28 | Add new file with classification hierarchy ontology•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-25 | Replace gdmt: with dcat:•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-23 | Add all transformers as inputs to transform-with-documentation•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-23 | Update how NCBI genewiki entries are transformed•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-23 | Update how symbols from GeneRIF_BASIC are transformed•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-23 | Add foaf prefix when transforming generif data•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-23 | Update how gn-specific genewiki entries are transformed•••Each comment is identified using a unique uuid so that we can identify it's metadata I.e time, author, symbol, etc. | Munyoki Kilyungi |
| 2023-08-21 | Replace gnt:traitName with rdfs:label•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-21 | Delete gnt:hasAcknowledgement from InfoFiles•••We fetch all our metadata from the Datasets table. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-21 | Add missing function•••* examples/dataset-metadata.scm (remap-species-identifiers): New function. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-21 | Remove hard-coded paths•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-21 | Rename dump -> transform•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-21 | Remove "dump-" prefix•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-21 | Rename define-dump -> define-transformer•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-21 | Replace inbredSet with set as the string-identifier•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-08-21 | Move dumps related to datasets to one place•••* examples/dump-dataset-metadata.scm: Add dump-gene-chip, dump-publishfreeze, dump-genofreeze, dump-probesetfreeze * examples/dump-genotype.scm: Delete dump-genofreeze. * examples/dump-phenotype.scm: Delete dump-publishfreeze. * examples/dump-probesetfreeze.scm: Delete file | Munyoki Kilyungi |
 |
index : gn-transform-databases | |
| Data transformers for GeneNetwork (particularly to RDF) |
| aboutsummaryrefslogtreecommitdiff |