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Data transformers for GeneNetwork (particularly to RDF)
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2023-07-21
Dump probeset-metadata using the new syntax
Munyoki Kilyungi
2023-07-21
Dump genotypes with the new syntax
Munyoki Kilyungi
2023-07-21
Use "gn:" and "gn-term:" when dumping phenotypes
Munyoki Kilyungi
2023-07-21
Replace "publication:" with "pubmed:"
Munyoki Kilyungi
2023-07-21
Use "gn:" and "gn-terms" prefixes
Munyoki Kilyungi
2023-07-21
Make 'inputs' and 'outputs' fields lists
Munyoki Kilyungi
2023-07-21
Remove unnecessary prefixes
Munyoki Kilyungi
2023-07-21
Rename 'gn-id' prefix to 'gn'
Munyoki Kilyungi
2023-07-21
Dump phenotypes with documentation.
Munyoki Kilyungi
2023-07-21
Dump probeset metadata with documentation
Munyoki Kilyungi
2023-07-21
Update tissue dump to use gn-term/gn-id
Munyoki Kilyungi
2023-07-21
Replace gn with gn-term and gn-id where suitable
Munyoki Kilyungi
2023-07-21
Replace gn:species with gn-species
Munyoki Kilyungi
2023-07-21
Update dump-species to have lists for inputs and output
Munyoki Kilyungi
2023-07-21
Add "gn:species:" prefix
Munyoki Kilyungi
2023-07-21
Capitalize species identifier
Munyoki Kilyungi
2023-07-21
Dump dataset metadata with documentation
Munyoki Kilyungi
2023-07-21
Dump publication metadata with documentation
Munyoki Kilyungi
2023-07-21
Dump tissue metadata with documentation
Munyoki Kilyungi
2023-07-21
Dump species metadata with documentation
Munyoki Kilyungi
2023-06-19
Chunk probeset dump
Munyoki Kilyungi
2023-06-12
Add a dataset's full name when dumping
Munyoki Kilyungi
2023-06-12
Use PublishFreeze Name as a fallback for InfoPageName
Munyoki Kilyungi
2023-06-12
Annotate a phenotype dataset with 'dataset:
Munyoki Kilyungi
2023-06-12
Replace "Unknown" in Publication fields with an empty string
Munyoki Kilyungi
2023-06-12
Annotate publications without a pmid with "unpublished"
Munyoki Kilyungi
2023-06-12
Use "publication:" as an identifier for publications
Munyoki Kilyungi
2023-06-12
Remove check for confidentiality/publicity during dataset dump
Munyoki Kilyungi
2023-06-12
Add geoPlatfrom to dataset dump
Munyoki Kilyungi
2023-06-12
Add missing Species join when dumping datasets
Munyoki Kilyungi
2023-06-12
Use the correct title for the a dataset
Munyoki Kilyungi
2023-06-12
Rename AboutProcessing alias to AboutDataProcessing
Munyoki Kilyungi
2023-06-12
Replace citations to source from Datasets instead of InfoFiles
Munyoki Kilyungi
2023-06-12
Rename sql-alias of GN notes during dataset dump
Munyoki Kilyungi
2023-06-12
Add rdf defs for datasetOfSpecies
Munyoki Kilyungi
2023-06-12
Add publicationTitle to dataset dump
Munyoki Kilyungi
2023-06-12
Make geoSeries a link during dataset dump
Munyoki Kilyungi
2023-06-12
Minor identation fix
Munyoki Kilyungi
2023-06-12
Add organization to dataset dump
Munyoki Kilyungi
2023-06-12
Use NCBI taxonomy browser instead of uniprot
Munyoki Kilyungi
2023-06-12
Cast longtext fields to fix broket utf-8 characters
Munyoki Kilyungi
2023-06-12
Remove dead comments
Munyoki Kilyungi
2023-06-12
Remove "^[Nn]one$" from some fields from the InfoFiles table
Munyoki Kilyungi
2023-06-12
Default to InfoFiles with the Dataset being a fallback for citations
Munyoki Kilyungi
2023-06-12
Make ((g/ph)enotype/probeset)Dataset subset of Dataset
Munyoki Kilyungi
2023-05-30
Dump OMIM as a normal string without any annotation
Munyoki Kilyungi
2023-05-30
Fix broken utf-8 strings in abstract field
Munyoki Kilyungi
2023-05-30
Add probeset as an extra prefix
Munyoki Kilyungi
2023-05-30
Delete unused prefixes
Munyoki Kilyungi
2023-05-30
Replace species with inbredSet metadata when dumping info-files
Munyoki Kilyungi
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