| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2024-08-14 | Remove 'gene: ontology from GeneId prefix. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-14 | Make symbol field a multiset in probeset transform. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-14 | Add missing RDF prefix during ProbeSet transform. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-01-05 | Correct formatting for the gnt:location predicate for ProbeSets. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-12-22 | Use gnt:geneSymbol instead of rdfs:label/gnt:symbol. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-12-22 | Use gnt:hasGeneId instead of gnt:gene/dct:references. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-12-15 | Preserve gene symbol case when used as an identifer. | Munyoki Kilyungi | |
| Genes with varying casing (e.g., Shh, SHH) result in `string->identifier` capitalizing the first letter by default. This creates inconsistencies in gene symbols, leading to different predicates and objects for the same entity, introducing errors. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-12-15 | Use URI encoding for OMIM and homologene resource link handling. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-12-15 | Refactor Uniprot and GeneId handling in ProbeSet RDF transform. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-12-15 | Add missing "gene:" prefix in ProbeSet RDF transform. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-12-14 | Remove some resource links from ProbeSet RDF transform. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-22 | "Add special-case for blank Chr field". | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-22 | Construct URIs for external data in RDF ProbeSet transform. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-22 | Add extra joins for GeneList and GeneList_rn33. | Munyoki Kilyungi | |
| These tables are referenced when constructing URIs for mouse and rat data. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-22 | Delete some RDF prefixes when transforming ProbeSet metadata. | Munyoki Kilyungi | |
| External resources are explicitly defined so we don't need these prefixes. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-22 | Remove unused properties during ProbeSet RDF transform. | Munyoki Kilyungi | |
| The removed terms are actually used when constructing terms. Most of this values are NULL anyways. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-22 | Add Species join when during RDF ProbeSet transform. | Munyoki Kilyungi | |
| We add the species join since when constructing resource links, this table is required. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-21 | Add extra gnt:location term when transforming ProbeSet metadata. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-21 | Add strand position when transforming ProbeSet metadata. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-11-21 | Delete un-necessary predicates from ProbeSet transform. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-08-28 | Add qb: and sdmx-measure: prefixes | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-08-28 | Replace gnc:probeset with gnc:Probeset | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-08-21 | Remove hard-coded paths | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-08-21 | Rename dump -> transform | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-08-21 | Remove "dump-" prefix | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
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index : gn-transform-databases | |
| Data transformers for GeneNetwork (particularly to RDF) |
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