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Data transformers for GeneNetwork (particularly to RDF)
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probeset.scm
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2024-08-14
Remove 'gene: ontology from GeneId prefix.
Munyoki Kilyungi
2024-08-14
Make symbol field a multiset in probeset transform.
Munyoki Kilyungi
2024-08-14
Add missing RDF prefix during ProbeSet transform.
Munyoki Kilyungi
2024-01-05
Correct formatting for the gnt:location predicate for ProbeSets.
Munyoki Kilyungi
2023-12-22
Use gnt:geneSymbol instead of rdfs:label/gnt:symbol.
Munyoki Kilyungi
2023-12-22
Use gnt:hasGeneId instead of gnt:gene/dct:references.
Munyoki Kilyungi
2023-12-15
Preserve gene symbol case when used as an identifer.
Munyoki Kilyungi
2023-12-15
Use URI encoding for OMIM and homologene resource link handling.
Munyoki Kilyungi
2023-12-15
Refactor Uniprot and GeneId handling in ProbeSet RDF transform.
Munyoki Kilyungi
2023-12-15
Add missing "gene:" prefix in ProbeSet RDF transform.
Munyoki Kilyungi
2023-12-14
Remove some resource links from ProbeSet RDF transform.
Munyoki Kilyungi
2023-11-22
"Add special-case for blank Chr field".
Munyoki Kilyungi
2023-11-22
Construct URIs for external data in RDF ProbeSet transform.
Munyoki Kilyungi
2023-11-22
Add extra joins for GeneList and GeneList_rn33.
Munyoki Kilyungi
2023-11-22
Delete some RDF prefixes when transforming ProbeSet metadata.
Munyoki Kilyungi
2023-11-22
Remove unused properties during ProbeSet RDF transform.
Munyoki Kilyungi
2023-11-22
Add Species join when during RDF ProbeSet transform.
Munyoki Kilyungi
2023-11-21
Add extra gnt:location term when transforming ProbeSet metadata.
Munyoki Kilyungi
2023-11-21
Add strand position when transforming ProbeSet metadata.
Munyoki Kilyungi
2023-11-21
Delete un-necessary predicates from ProbeSet transform.
Munyoki Kilyungi
2023-08-28
Add qb: and sdmx-measure: prefixes
Munyoki Kilyungi
2023-08-28
Replace gnc:probeset with gnc:Probeset
Munyoki Kilyungi
2023-08-21
Remove hard-coded paths
Munyoki Kilyungi
2023-08-21
Rename dump -> transform
Munyoki Kilyungi
2023-08-21
Remove "dump-" prefix
Munyoki Kilyungi
