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2023-08-15Rename dump-probeset-metadata -> dump-probeset-dataMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-15Remove "xsd:double" annotationMunyoki Kilyungi
A probeset' specificity and BLAT_score can be 0. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-15Dump probeset summary statsMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-15Rename probeset dataset nameMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-15Introduce phenotype/genotype/probeset Dataset as a categoryMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-15Return "" for non-empty strings in string->identifier/annotate-fieldMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-15Update probeset dumpMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-15Update how probesetfreeze metadata is dumpedMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-15Replace "used" with "uses" in ontologyMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-15Update how genotypes are dumpedMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-15Use prism, fabio and dct ontologies to represent a publicationMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-15Dump publishfreeze dataMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-15Remove explicity cast when dumping strainsMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-15Delete explicit sql-level utf-8 conversionsMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-12Add comment on Strain tablePjotr Prins
2023-08-12Git repoPjotr Prins
2023-08-12Add git clonePjotr Prins
2023-08-12Add LICENSEPjotr Prins
2023-08-11Use correct encoding when writing to a fileMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-09Update how phenotypes are dumpedMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-09Add new line before dump titleMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-07Update phenotype and publishfreeze dumpMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-07Replace gnt:name/shortName with skos:label/altLabelMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-07Update publish-freeze dumpMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-07Update how published datasets are dumpedMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-07Replace gdmt:hasTitleInfo with skos:prefLabelMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-07Fix typoMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-07Update tissue dumpMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-07Dump molecular traitsMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-07Add extra metadata to gnc: and gnt: itemsMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-04Annotate terms related to speciesMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-04Add gnt:shortName to species dumpMunyoki Kilyungi
2023-08-04Updated species.ttl and sorted entriesPjotr Prins
2023-08-02Re-model how datasets are fetchedMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-02Correct the associations between subject and objectMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-02Introduce a vCard prefix to store metadata about an investigatorMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-02README: add link to gemtextPjotr Prins
2023-08-02Added missing prefix to species.ttlPjotr Prins
2023-08-02species.ttl: added shortNamePjotr Prins
2023-08-02Species: added commentPjotr Prins
2023-08-02species: add entryPjotr Prins
2023-07-31Remove duplicate entries for alias/symbol/name when dumping strainsMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-07-31Fix terms in inbredSet dumpMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-07-31Update how MappingMethod, InbredSet and AvgMethod are modelledMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-07-31Update how strains are modelledMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-07-31Update how species are modelledMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-07-31Use the correct name for Monkey (Macaca nemestrina)Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-07-31Use remap-identifiersMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-07-31Merge branch 'master' into self-document-while-dumpingBonfaceKilz
2023-07-31Pass a default dump-directory when dumping table metadataMunyoki Kilyungi
* dump/schema-dump.scm (dump-data-table): Add extra optional arg "default-dump-directory". Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
generated by cgit v1.2.3 (git 2.44.0) at 2024-12-27 07:47:33 +0000