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| author | Munyoki Kilyungi | 2023-08-15 18:56:40 +0300 |
|---|---|---|
| committer | Munyoki Kilyungi | 2023-08-15 19:32:48 +0300 |
| commit | aba4bb229ae581dfa00353883e522b9a77fa8a09 (patch) | |
| tree | e2dbb0edab49ee8fb583d5f20d6c02785ac806cf | |
| parent | e1f390b7fab33d33fa3d813a74ae8b7d935c929b (diff) | |
| download | gn-transform-databases-aba4bb229ae581dfa00353883e522b9a77fa8a09.tar.gz | |
Rename probeset dataset name
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| -rwxr-xr-x | examples/dump-probeset-metadata.scm | 10 |
1 files changed, 6 insertions, 4 deletions
diff --git a/examples/dump-probeset-metadata.scm b/examples/dump-probeset-metadata.scm index 37fef70..045a747 100755 --- a/examples/dump-probeset-metadata.scm +++ b/examples/dump-probeset-metadata.scm @@ -23,13 +23,15 @@ (left-join ProbeSetFreeze "ON ProbeSetXRef.ProbeSetFreezeId = ProbeSetFreeze.Id")) "WHERE ProbeSetFreeze.public > 0 AND ProbeSetFreeze.confidentiality < 1") (schema-triples - (gn:probesetData rdfs:range gn:probeset) (gnt:hasProbeset rdfs:range rdfs:Literal)) (triples (string->identifier - "probesetData" - (field ("CONCAT(ProbeSetFreeze.Name,':',IFNULL(ProbeSet.Name, ProbeSet.Id))" - ProbeSetName))) + "" + (regexp-substitute/global #f "[^A-Za-z0-9:]" + (field ProbeSetFreeze Name) + 'pre "_" 'post) + #:separator "" + #:proc string-capitalize-first) (set rdf:type 'gnc:probesetData) (set gnt:hasProbeset (ontology |