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2 daysRename classification with-documentation name.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2 daysDisplay the locus as a string.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
3 daysUpdate phenotypes.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
3 daysFix empty phenotypes trait page.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
3 daysAdd missing join.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
3 daysUpdate phenotypes.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
3 daysUpdate phenotypes.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
3 daysLink (molecular) dataset to set.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
3 daysRemove duplicate.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
4 daysRename publication -> publication->metadata.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
4 daysUpdate phenotypes.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
4 daysMove all ontology to one place.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
4 daysDelete duplicated function.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
8 daysAdd phenotype dataset metadata.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
8 daysRename {genotype,molecular-traits}.scm.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
8 daysUpdate "with-documentation" name.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
8 daysAdd gn:dataset->gn:set.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
8 daysReplace gn:genotype->metadata with gn:set->gn:dataset.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
8 daysMove gnt:has_strain for datasets to datasets.scm.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
8 daysRename gn:molecular-traits->gn:datasets.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
8 daysDelete redundant transform.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
8 daysUpdate skos:definition of genechip.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
8 daysAdd datasets.scmMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
8 daysAdd gn:genotype->metadata.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
8 daysAdd missing definitions for gnc:has_probeset_data.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
8 daysDelete genotypes.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
8 daysCorrectly use the correct fields from Datasets table.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
8 daysDelete duplication in molecular-traits.scm.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
8 daysDelete monkey data.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
8 daysUse correct name for gene-chip.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
8 daysSanitize rdf string for InbredSet description.Munyoki Kilyungi
Error: classification.ttl:409 - Turtle string error - illegal escape \x (#x78) Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
8 daysRemove monkey data.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
9 daysDelete old dataset modelling.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
9 daysReplace "cruft" -> "obsolete".Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
9 daysUpdate mRNA datasets.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
9 daysRemodel genechip metadata.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
9 daysMove genechip ontology to own file.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
9 daysMove investigators transform to its own file.Munyoki Kilyungi
* examples/dataset-metadata.scm (investigators): Delete. (option-spec)[investigators]: Delete * transform/strings.scm (fix-email-id, investigator-attributes->id): Move these ... * examples/investigators.scm: ... here. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
9 daysclassification.scm: Rename transformers.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
9 daysMark monkey data as cruft.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
9 daysMove fix-email-id/investigator-attributes->id to string.scmMunyoki Kilyungi
* examples/dataset-metadata.scm (fix-email-id, investigator-attributes->id): Move this ... * transform/strings.scm: here. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
9 daysCorrectly use molecular_trait.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
9 daysRename things.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
9 daysAdd molecular traits.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
10 daysUse correct hierarchy.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
10 daysDelete un-used ontology.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
10 daysUse snake case.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
10 daysRename tissue.scm -> molecular-traits.scm.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
10 daysRename has_population_category -> has_reference_population.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
10 daysCorrectly remodel GN classification hierarchy.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>