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2023-08-17Update genotype rdf transformation...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-17Update how phenotypes are transformed...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-15Rename gnt:molecularTrait -> gnt:hasTissue...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-15Add missing skos prefix...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-15Add "probeset_" prefix to probesets...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-15Rename dump-probeset-metadata -> dump-probeset-data...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-15Remove "xsd:double" annotation...A probeset' specificity and BLAT_score can be 0. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-15Dump probeset summary stats...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-15Rename probeset dataset name...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-15Introduce phenotype/genotype/probeset Dataset as a category...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-15Return "" for non-empty strings in string->identifier/annotate-field...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-15Update probeset dump...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-15Update how probesetfreeze metadata is dumped...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-15Replace "used" with "uses" in ontology...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-15Update how genotypes are dumped...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-15Use prism, fabio and dct ontologies to represent a publication...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-15Dump publishfreeze data...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-15Remove explicity cast when dumping strains...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-15Delete explicit sql-level utf-8 conversions...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-12Add comment on Strain tablePjotr Prins
2023-08-12Git repoPjotr Prins
2023-08-12Add git clonePjotr Prins
2023-08-12Add LICENSEPjotr Prins
2023-08-11Use correct encoding when writing to a file...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-09Update how phenotypes are dumped...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-09Add new line before dump title...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-07Update phenotype and publishfreeze dump...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-07Replace gnt:name/shortName with skos:label/altLabel...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-07Update publish-freeze dump...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-07Update how published datasets are dumped...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-07Replace gdmt:hasTitleInfo with skos:prefLabel...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-07Fix typo...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-07Update tissue dump...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-07Dump molecular traits...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-07Add extra metadata to gnc: and gnt: items...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-04Annotate terms related to species...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-04Add gnt:shortName to species dumpMunyoki Kilyungi
2023-08-04Updated species.ttl and sorted entriesPjotr Prins
2023-08-02Re-model how datasets are fetched...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-02Correct the associations between subject and object...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-02Introduce a vCard prefix to store metadata about an investigator...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-02README: add link to gemtextPjotr Prins
2023-08-02Added missing prefix to species.ttlPjotr Prins
2023-08-02species.ttl: added shortNamePjotr Prins
2023-08-02Species: added commentPjotr Prins
2023-08-02species: add entryPjotr Prins
2023-07-31Remove duplicate entries for alias/symbol/name when dumping strains...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Fix terms in inbredSet dump...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Update how MappingMethod, InbredSet and AvgMethod are modelled...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Update how strains are modelled...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi