gn-transform-databases - Data transformers for GeneNetwork (particularly to RDF)

Age	Commit message (Expand)	Author
2023-12-20	Set up as Guix channel for CI.	Arun Isaac
2023-12-20	Use guile to run tests.	Arun Isaac
2023-12-20	Set correct top level module directory.	Arun Isaac
2023-12-20	Fix srfi-26 import typo.	Arun Isaac
2023-12-15	Preserve gene symbol case when used as an identifer.	Munyoki Kilyungi
2023-12-15	Use URI encoding for OMIM and homologene resource link handling.	Munyoki Kilyungi
2023-12-15	Refactor Uniprot and GeneId handling in ProbeSet RDF transform.	Munyoki Kilyungi
2023-12-15	Add missing "gene:" prefix in ProbeSet RDF transform.	Munyoki Kilyungi
2023-12-15	Trim gene symbol rdfs:label for the GeneList_rn33 table.	Munyoki Kilyungi
2023-12-15	Use URI encoding for symbol-based resource link URLs.	Munyoki Kilyungi
2023-12-14	Remove "remap-species-identifiers" from generif transform.	Munyoki Kilyungi
2023-12-14	Link extra resources to genes and trim gene symbols.	Munyoki Kilyungi
2023-12-14	Refactor symbol identifier in strains.scm.	Munyoki Kilyungi
2023-12-14	Add GeneList metadata RDF transform.	Munyoki Kilyungi
2023-12-14	Remove some resource links from ProbeSet RDF transform.	Munyoki Kilyungi
2023-12-14	Use correct identifier for the AvgMethod table.	Munyoki Kilyungi
2023-12-04	Replace xkos:classifiedUnder -> gnt:belongsToGroup.	Munyoki Kilyungi
2023-12-04	Replace xkos:classifiedUnder -> gnt:belongsToSpecies for species.	Munyoki Kilyungi
2023-12-04	Replace xkos:classifiendUnder with gnt:belongsToGroup for groups.	Munyoki Kilyungi
2023-12-04	Fix typo in publishfreeze transform.	Munyoki Kilyungi
2023-11-30	Trim the contributor's name when transforming phenotype metadata.	Munyoki Kilyungi
2023-11-30	Add a label to the "gnt:lodScore" term.	Munyoki Kilyungi
2023-11-30	Set a phenotype's gnt:locus to a genotype.	Munyoki Kilyungi
2023-11-30	Replace LRS with LOD Score.	Munyoki Kilyungi
2023-11-24	Move remap-species-identifier to strings.scm.	Munyoki Kilyungi
2023-11-22	"Add special-case for blank Chr field".	Munyoki Kilyungi
2023-11-22	Construct URIs for external data in RDF ProbeSet transform.	Munyoki Kilyungi
2023-11-22	Add extra joins for GeneList and GeneList_rn33.	Munyoki Kilyungi
2023-11-22	Delete some RDF prefixes when transforming ProbeSet metadata.	Munyoki Kilyungi
2023-11-22	Add 'lower-case-and-replace-spaces' function	Munyoki Kilyungi
2023-11-22	Remove unused properties during ProbeSet RDF transform.	Munyoki Kilyungi
2023-11-22	Add Species join when during RDF ProbeSet transform.	Munyoki Kilyungi
2023-11-21	Add extra gnt:location term when transforming ProbeSet metadata.	Munyoki Kilyungi
2023-11-21	Add strand position when transforming ProbeSet metadata.	Munyoki Kilyungi
2023-11-21	Delete un-necessary predicates from ProbeSet transform.	Munyoki Kilyungi
2023-11-20	Add "gnt:belongsToSpecies" and "gnt:belongsToGroup" gn terms.	Munyoki Kilyungi
2023-11-17	Remove "FamilyOrder" join when transforming Species table.	Munyoki Kilyungi
2023-11-17	Capitalize InbredSetName id's consistently.	Munyoki Kilyungi
2023-11-17	Make species identifiers consistent.	Munyoki Kilyungi
2023-11-17	Revert "Make Phenotypy InbredSet classification consistent."	Munyoki Kilyungi
2023-11-17	Make Phenotypy InbredSet classification consistent.	Munyoki Kilyungi
2023-10-20	Use the correct URL for "gnt:" prefix.	Munyoki Kilyungi
2023-10-20	Alias Publication.Id to PublicationId	Munyoki Kilyungi
2023-10-19	Use InbredSetCode instead of Name when creating a trait name.	Munyoki Kilyungi
2023-10-19	Check (Publish/Geno)Freeze for InbredSet if NULL in InfoFiles.	Munyoki Kilyungi
2023-10-19	Remove un-necessary WHERE clause when dumping phenotypes.	Munyoki Kilyungi
2023-10-19	Add missing xkos prefix in phenotype dump.	Munyoki Kilyungi
2023-10-17	Index text when loading data.	Munyoki Kilyungi
2023-10-17	Replace skos:prefLabel with rdfs:label for genotypes.	Munyoki Kilyungi
2023-10-16	Group genotype labels together.	Munyoki Kilyungi