diff options
Diffstat (limited to 'examples')
| -rwxr-xr-x | examples/molecular-traits.scm | 24 |
1 files changed, 4 insertions, 20 deletions
diff --git a/examples/molecular-traits.scm b/examples/molecular-traits.scm index c761cd3..bed0c6c 100755 --- a/examples/molecular-traits.scm +++ b/examples/molecular-traits.scm @@ -51,26 +51,6 @@ dataset_name)) #\,))))) -(define-transformer gn:dataset->set/species/molecular_trait - (tables (Species - (inner-join InbredSet "ON InbredSet.SpeciesId = Species.Id") - (inner-join ProbeFreeze "ON ProbeFreeze.InbredSetId = InbredSet.Id") - (inner-join ProbeSetFreeze "ON ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id") - (inner-join Tissue "ON ProbeFreeze.TissueId = Tissue.Id")) - "WHERE ProbeSetFreeze.public > 0 AND Species.Name != 'monkey'") - (schema-triples - (gnt:has_molecular_trait rdf:type owl:ObjectProperty) - (gnt:has_molecular_trait rdfs:domain gnc:set) - (gnt:has_molecular_trait rdfs:range gnc:molecular_trait) - (gnt:has_molecular_trait rdfs:label "has molecular trait")) - (triples (string->identifier "dataset" (field ProbeSetFreeze Name) #:separator "_") - (set gnt:has_strain - (string->identifier "set" (field InbredSet Name InbredSetName) #:separator "_")) - (set gnt:has_species - (string->identifier "" (remap-species-identifiers (field Species Fullname)))) - (set gnt:has_molecular_trait - (string->identifier "trait" (field Tissue Short_Name) #:separator "_")))) - (define-transformer gn:dataset->metadata (tables (ProbeSetFreeze (inner-join ProbeFreeze "ON ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id") @@ -83,6 +63,10 @@ (left-join GeneChip "ON GeneChip.Id = InfoFiles.GeneChipId")) "WHERE ProbeSetFreeze.public > 0 AND Species.Name != 'monkey'") (schema-triples + (gnt:has_molecular_trait rdf:type owl:ObjectProperty) + (gnt:has_molecular_trait rdfs:domain gnc:set) + (gnt:has_molecular_trait rdfs:range gnc:molecular_trait) + (gnt:has_molecular_trait rdfs:label "has molecular trait") (gnt:uses_genechip a owl:ObjectProperty) (gnt:uses_genechip rdfs:domain dcat:Dataset) (gnt:uses_genechip skos:definition "The Platform this resource uses..") |