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-rwxr-xr-xexamples/genotype.scm26
1 files changed, 11 insertions, 15 deletions
diff --git a/examples/genotype.scm b/examples/genotype.scm
index 830da0a..9dc155a 100755
--- a/examples/genotype.scm
+++ b/examples/genotype.scm
@@ -29,36 +29,31 @@
(tables (Geno
(left-join Species "USING (SpeciesId)")))
(schema-triples
- (gnc:genotype a skos:Concept)
- (gnc:genotype
- skos:description
- "This is a set of controlled terms that are used to describe a given genotype")
(gnt:chr a owl:ObjectProperty)
(gnt:chr skos:description "This resource is located on a given chromosome")
- (gnt:chr rdfs:domain gnc:genotype)
+ (gnt:chr rdfs:domain gnc:Genotype)
(gnt:mb a owl:ObjectProperty)
(gnt:mb skos:definition "The size of this resource in Mb")
- (gnt:mb rdfs:domain gnc:genotype)
+ (gnt:mb rdfs:domain gnc:Genotype)
(gnt:mbMm8 a owl:ObjectProperty)
(gnt:mbMm8 skos:definition "TODO")
- (gnt:mbMm8 rdfs:domain gnc:genotype)
+ (gnt:mbMm8 rdfs:domain gnc:Genotype)
(gnt:mb2016 a owl:ObjectProperty)
(gnt:mb2016 skos:definition "TODO")
- (gnt:mb2016 rdfs:domain gnc:genotype)
+ (gnt:mb2016 rdfs:domain gnc:Genotype)
(gnt:hasSequence a owl:ObjectProperty)
(gnt:hasSequence skos:definition "This resource has a given sequence")
- (gnt:hasSequence rdfs:domain gnc:genotype)
+ (gnt:hasSequence rdfs:domain gnc:Genotype)
(gnt:hasSource a owl:ObjectProperty)
- (gnt:hasSource rdfs:domain gnc:genotype)
+ (gnt:hasSource rdfs:domain gnc:Genotype)
(gnt:hasSource skos:definition "This resource was obtained from this given source")
(gnt:hasAltSourceName a owl:ObjectProperty)
- (gnt:hasAltSourceName rdfs:domain gnc:genotype)
+ (gnt:hasAltSourceName rdfs:domain gnc:Genotype)
(gnt:hasAltSourceName
skos:definition
"The alternative name this resource was obtained from")
(gnt:chrNum a owl:ObjectProperty)
- (gnt:chrNum rdfs:domain gnc:genotype)
- (gnt:chrNum skos:definition "The chromosome number for this resource")
+ (gnt:chrNum rdfs:domain gnc:Genotype)
(gnt:chrNum skos:definition "The chromosome number for this resource"))
(triples
(string->identifier
@@ -69,7 +64,7 @@
'pre "_" 'post)
#:separator ""
#:proc string-capitalize-first)
- (set rdf:type 'gnc:genotype)
+ (set rdf:type 'gnc:Genotype)
(set skos:prefLabel (sanitize-rdf-string (field Geno Name)))
(set gnt:chr (field Geno Chr))
(set gnt:mb (annotate-field
@@ -85,7 +80,7 @@
(set gnt:hasAltSourceName
(field ("IF((Source2 = Source), NULL, Source2)"
Source2)))
- (set gnt:belongsToSpecies
+ (set xkos:classifiedUnder
(string->identifier
"" (remap-species-identifiers (field Species Fullname))
#:separator ""
@@ -122,6 +117,7 @@
("rdfs:" "<http://www.w3.org/2000/01/rdf-schema#>")
("owl:" "<http://www.w3.org/2002/07/owl#>")
("skos:" "<http://www.w3.org/2004/02/skos/core#>")
+ ("xkos:" "<http://rdf-vocabulary.ddialliance.org/xkos#>")
("xsd:" "<http://www.w3.org/2001/XMLSchema#>")))
(inputs
(list genotypes))