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-rwxr-xr-xexamples/dump-species-metadata.scm26
1 files changed, 21 insertions, 5 deletions
diff --git a/examples/dump-species-metadata.scm b/examples/dump-species-metadata.scm
index c3b62a6..ebfc1a2 100755
--- a/examples/dump-species-metadata.scm
+++ b/examples/dump-species-metadata.scm
@@ -31,13 +31,16 @@
(define-dump dump-species
(tables (Species))
(schema-triples
- (gnc:species rdf:type owl:Class)
+ (gnc:species a skos:Concept)
+ (gnc:species skos:description "This is a set of controlled terms that are used to describe a given species")
+ (gnc:species skos:broader gnc:family)
(gnt:name a owl:ObjectProperty)
(gnt:name rdfs:domain gnc:species)
(gnt:binomialName a owl:ObjectProperty)
(gnt:binomialName rdfs:domain gnc:species)
(gnt:family a owl:ObjectProperty)
(gnt:family rdfs:domain gnc:species)
+ (gnt:family skos:definition "This resource belongs to this family")
(gnt:organism a owl:ObjectProperty)
(gnt:organism rdfs:domain gnc:species)
(gnt:shortName a owl:ObjectProperty)
@@ -58,10 +61,15 @@
(tables (Strain
(left-join Species "ON Strain.SpeciesId = Species.SpeciesId")))
(schema-triples
- (gnc:strain rdf:subClassOf gnc:species)
+ (gnc:strain skos:broader gnc:species)
(gnt:species rdfs:domain gnc:strain)
+ (gnt:species skos:definition "This resource belongs to this species")
+ (gnt:species a owl:ObjectProperty)
+ (gnt:species skos:definition "This resource belongs to this species")
(gnt:alias rdfs:domain gnc:strain)
- (gnt:symbol rdfs:domain gnc:strain))
+ (gnt:alias a owl:ObjectProperty)
+ (gnt:symbol rdfs:domain gnc:strain)
+ (gnt:symbol a owl:ObjectProperty))
(triples (string->identifier
""
(regexp-substitute/global
@@ -84,7 +92,8 @@
(define-dump dump-mapping-method
(tables (MappingMethod))
(schema-triples
- (gnc:mappingMethod rdf:type owl:Class))
+ (gnc:mappingMethod a skos:Concept)
+ (gnc:mappingMethod skos:definition "Terms that decribe mapping/normalization methods used in GeneNetwork"))
(triples
(string->identifier "mappingMethod" (field MappingMethod Name))
(set rdf:type 'gnc:mappingMethod)
@@ -96,12 +105,19 @@
(left-join MappingMethod
"ON InbredSet.MappingMethodId=MappingMethod.Id")))
(schema-triples
- (gnc:inbredSet rdf:subClassOf gnc:species)
+ (gnc:inbredSet skos:broader gnc:species)
+ (gnc:inbredSet skos:definition "A set of terms used to describe an inbred set")
+ (gnt:geneticType a owl:ObjectProperty)
(gnt:geneticType rdfs:domain gnc:inbredSet)
+ (gnt:code a owl:ObjectProperty)
(gnt:code rdfs:domain gnc:inbredSet)
+ ;; Already defined as an owl prop in dump-species
(gnt:family rdfs:domain gnc:inbredSet)
+ (gnt:phenotype a owl:ObjectProperty)
(gnt:phenotype rdfs:domain gnc:inbredSet)
+ (gnt:genotype a owl:ObjectProperty)
(gnt:genotype rdfs:domain gnt:inbredSet)
+ (gnt:mappingMethod a owl:ObjectProperty)
(gnt:mappingMethod rdfs:domain gnc:inbredSet))
(triples (string->identifier
"" (field InbredSet Name)