diff options
Diffstat (limited to 'examples/molecular-traits-datasets.scm')
| -rwxr-xr-x | examples/molecular-traits-datasets.scm | 24 |
1 files changed, 0 insertions, 24 deletions
diff --git a/examples/molecular-traits-datasets.scm b/examples/molecular-traits-datasets.scm index 77bba08..98b55c6 100755 --- a/examples/molecular-traits-datasets.scm +++ b/examples/molecular-traits-datasets.scm @@ -14,11 +14,6 @@ (define-transformer gn:molecular-trait->gn:dataset (tables (Tissue)) - (schema-triples - (gnc:molecular_trait a owl:Class) - (gnc:molecular_trait a skos:Concept) - (gnc:molecular_trait rdfs:subClassOf obo:UBERON_0000479) - (gnc:molecular_trait rdfs:label "Molecular Trait. This describes a melecular trait of a given species. We combine the species name and the tissue name in order to differentiate the traits across different inbredset groups.")) (triples (string->identifier "trait" (field Tissue Short_Name) #:separator "_") (set rdf:type 'gnc:molecular_trait) (set skos:prefLabel (field Tissue Name)) @@ -36,13 +31,6 @@ (inner-join ProbeSetFreeze "ON ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id") (inner-join Tissue "ON ProbeFreeze.TissueId = Tissue.Id")) "WHERE ProbeSetFreeze.public > 0 AND Species.Name != 'monkey' GROUP BY Species.Name, Tissue.Short_Name") - (schema-triples - (gnt:has_probeset_data rdf:type owl:ObjectProperty) - (gnt:has_probeset_data rdfs:label "this resources has this probeset data.") - (gnt:has_probeset_data rdfs:comment "Associates a resource with this probeset data.") - (gnt:has_probeset_data rdfs:domain gnc:set) - (gnt:has_probeset_data rdfs:range gnc:molecular_trait) - (gnt:has_probeset_data rdfs:subPropertyOf dct:relation)) (triples (string->identifier "set" (field InbredSet Name InbredSetName) #:separator "_") (multiset gnt:has_probeset_data (map (cut string->identifier "dataset" <> #:separator "_") @@ -62,18 +50,6 @@ (inner-join Datasets "ON InfoFiles.DatasetId = Datasets.DatasetId") (left-join GeneChip "ON GeneChip.Id = InfoFiles.GeneChipId")) "WHERE ProbeSetFreeze.public > 0 AND Species.Name != 'monkey'") - (schema-triples - (gnt:has_molecular_trait rdf:type owl:ObjectProperty) - (gnt:has_molecular_trait rdfs:domain gnc:set) - (gnt:has_molecular_trait rdfs:range gnc:molecular_trait) - (gnt:has_molecular_trait rdfs:label "has molecular trait") - (gnt:uses_genechip a owl:ObjectProperty) - (gnt:uses_genechip rdfs:domain dcat:Dataset) - (gnt:uses_genechip skos:definition "The Platform this resource uses..") - (gnt:uses_normalization_method rdfs:comment "The normalization method used for the molecular traits in this dataset") - (gnt:uses_normalization_method rdfs:domain dcat:Dataset) - (gnt:uses_normalization_method rdfs:label "Averaging method used for the molecular traits in this dataset.") - (gnt:uses_normalization_method rdfs:range gnc:avg_method)) (triples (string->identifier "dataset" (field ProbeSetFreeze Name) #:separator "_") (set dct:created (annotate-field (field ProbeSetFreeze CreateTime) '^^xsd:datetime)) (set gnt:uses_normalization_method |