diff options
Diffstat (limited to 'examples/genotype.scm')
| -rwxr-xr-x | examples/genotype.scm | 20 |
1 files changed, 15 insertions, 5 deletions
diff --git a/examples/genotype.scm b/examples/genotype.scm index 3b8f385..5261af7 100755 --- a/examples/genotype.scm +++ b/examples/genotype.scm @@ -14,11 +14,22 @@ (transform special-forms)) - - +(define-transformer gn:genotype->metadata + (tables (InbredSet + (inner-join GenoFreeze "ON GenoFreeze.InbredSetId = InbredSet.Id") + (inner-join InfoFiles "ON InfoFiles.InbredSetId = InbredSet.Id")) + "WHERE GenoFreeze.public > 0 GROUP BY GenoFreeze.Id") + (schema-triples + (gnc:genotype a owl:Class) + (gnc:genotype a skos:Concept) + (gnc:genotype rdfs:label "A genotype.")) + (triples (string->identifier "genotype" (field GenoFreeze Name) #:separator "_") + (set rdf:type 'gnc:genotype) + (set skos:prefLabel (field GenoFreeze FullName)) + (set skos:altLabel (field GenoFreeze ShortName)) + (set dct:created (annotate-field (field GenoFreeze CreateTime) '^^xsd:datetime)))) - (let* ((option-spec '((settings (single-char #\s) (value #t)) (output (single-char #\o) (value #t)) @@ -46,8 +57,7 @@ ("xkos:" "<http://rdf-vocabulary.ddialliance.org/xkos#>") ("xsd:" "<http://www.w3.org/2001/XMLSchema#>"))) (inputs - (list - )) + (list gn:genotype->metadata)) (outputs `(#:documentation ,documentation #:rdf ,output)))) |