diff options
Diffstat (limited to 'examples/dump-probesetfreeze.scm')
| -rwxr-xr-x | examples/dump-probesetfreeze.scm | 25 |
1 files changed, 13 insertions, 12 deletions
diff --git a/examples/dump-probesetfreeze.scm b/examples/dump-probesetfreeze.scm index a45fd0a..828ab00 100755 --- a/examples/dump-probesetfreeze.scm +++ b/examples/dump-probesetfreeze.scm @@ -20,11 +20,11 @@ (define-dump dump-gene-chip (tables (GeneChip)) (schema-triples - (gn-term:name rdfs:range rdfs:Literal)) + (gnt:name rdfs:range rdfs:Literal)) (triples (string->identifier "platform" (field GeneChip Name)) (set rdf:type 'gn:platform) - (set gn-term:name (field GeneChip GeneChipName)) - (set gn-term:geoPlatform + (set gnt:name (field GeneChip GeneChipName)) + (set gnt:geoPlatform (ontology 'geoSeries: (string-trim-both (field GeneChip GeoPlatform)))))) @@ -38,8 +38,8 @@ (left-join Tissue "ON ProbeFreeze.TissueId = Tissue.TissueId")) "WHERE ProbeSetFreeze.public > 0 AND InfoFiles.InfoPageName IS NULL GROUP BY ProbeFreeze.Id") (schema-triples - (gn-term:avgMethod rdfs:range rdfs:Literal) - (gn-term:dataScale rdfs:range rdfs:Literal) + (gnt:avgMethod rdfs:range rdfs:Literal) + (gnt:dataScale rdfs:range rdfs:Literal) (gn:probesetDataset rdf:subClassOf gn:dataset)) (triples (string->identifier @@ -51,15 +51,15 @@ #:separator "" #:proc string-capitalize-first) (set rdf:type 'gn:probesetDataset) - (set gn-term:avgMethod (string->identifier "avgmethod" (field AvgMethod Name))) - (set gn-term:fullName (field ProbeSetFreeze FullName)) - (set gn-term:shortName (field ProbeSetFreeze ShortName)) + (set gnt:avgMethod (string->identifier "avgmethod" (field AvgMethod Name))) + (set gnt:fullName (field ProbeSetFreeze FullName)) + (set gnt:shortName (field ProbeSetFreeze ShortName)) (set dct:created (annotate-field (field ProbeSetFreeze CreateTime) '^^xsd:datetime)) - (set gn-term:dataScale (field ProbeSetFreeze DataScale)) - (set gn-term:tissueName (string->identifier "tissue" (field Tissue Short_Name))) - (set gn-term:datasetOfInbredSet + (set gnt:dataScale (field ProbeSetFreeze DataScale)) + (set gnt:tissueName (string->identifier "tissue" (field Tissue Short_Name))) + (set gnt:datasetOfInbredSet (string->identifier "inbredSet" (field InbredSet Name InbredSetName))))) @@ -71,7 +71,8 @@ (prefixes '(("geoSeries:" "<http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=>") ("gn:" "<http://genenetwork.org/id/>") - ("gn-term:" "<http://genenetwork.org/term/>") + ("dct:" "<>") + ("gnt:" "<http://genenetwork.org/term/>") ("rdf:" "<http://www.w3.org/1999/02/22-rdf-syntax-ns#>") ("rdfs:" "<http://www.w3.org/2000/01/rdf-schema#>") ("xsd:" "<http://www.w3.org/2001/XMLSchema#>"))) |