diff options
Diffstat (limited to 'examples/dump-phenotype.scm')
| -rwxr-xr-x | examples/dump-phenotype.scm | 29 |
1 files changed, 0 insertions, 29 deletions
diff --git a/examples/dump-phenotype.scm b/examples/dump-phenotype.scm index f5a8c3c..6c52ebb 100755 --- a/examples/dump-phenotype.scm +++ b/examples/dump-phenotype.scm @@ -19,34 +19,6 @@ read)) - -;; These are phenotype datasets that don't have Infofile metadata -(define-dump dump-publishfreeze - (tables (PublishFreeze - (left-join InfoFiles "ON InfoFiles.InfoPageName = PublishFreeze.Name") - (left-join InbredSet "ON PublishFreeze.InbredSetId = InbredSet.InbredSetId")) - "WHERE PublishFreeze.public > 0 AND PublishFreeze.confidentiality < 1 AND InfoFiles.InfoFileId IS NULL") - (triples - (string->identifier - "" - (regexp-substitute/global #f "[^A-Za-z0-9:]" - (field PublishFreeze Name) - 'pre "_" 'post) - #:separator "" - #:proc string-capitalize-first) - (set rdf:type 'gnc:phenotypeDataset) - (set rdfs:label (field PublishFreeze Name)) - (set skos:prefLabel (field PublishFreeze FullName)) - (set skos:altLabel (field PublishFreeze ShortName)) - (set dct:created (annotate-field - (field PublishFreeze CreateTime) - '^^xsd:date)) - (set gnt:belongsToSet - (string->identifier - "inbredSet" (field InbredSet Name) - #:separator "" - #:proc string-capitalize-first)))) - (define-dump dump-phenotypes (tables (PublishXRef (left-join InbredSet "ON InbredSet.InbredSetId = PublishXRef.InbredSetId") @@ -147,7 +119,6 @@ ("pubmed:" "<http://rdf.ncbi.nlm.nih.gov/pubmed/>"))) (inputs (list - dump-publishfreeze dump-phenotypes)) (outputs '(#:documentation "./docs/dump-phenotype.md" |