diff options
| -rw-r--r-- | README.md | 9 | ||||
| -rw-r--r-- | conn.scm | 7 |
2 files changed, 5 insertions, 11 deletions
@@ -39,9 +39,7 @@ That reads the `etc/sample.json` file included in this repository and converts i ## Set up connection parameters -Describe the database connection parameters in a file *conn.scm* file as -shown below. Take care to replace the placeholders within angle brackets -with the appropriate values. +Describe the database connection parameters in a file *conn.scm* file as shown below. Take care to replace the placeholders within angle brackets with the appropriate values. ``` scheme ((sql-username . "<sql-username-here>") @@ -105,10 +103,7 @@ which does the same thing, but has the potential to be confusing due to the two ## Validate and load dump -Then, validate the dumped RDF using `rapper` and load it into -virtuoso. This will load the dumped RDF into the -`http://genenetwork.org` graph, and will delete all pre-existing data -in that graph (FIXME) +Then, validate the dumped RDF using `rapper` and load it into virtuoso. This will load the dumped RDF into the `http://genenetwork.org` graph, and will delete all pre-existing data in that graph (FIXME) ``` shell $ guix shell -m manifest.scm -- rapper --input turtle --count ~/data/dump/dump.ttl @@ -1,12 +1,11 @@ ((sql-username . "webqtlout") - (sql-password . "*") + (sql-password . "webqtlout") (sql-database . "db_webqtl") (sql-host . "localhost") (sql-port . 3306) - (virtuoso-port . 8891) + (virtuoso-port . 1111) (virtuoso-username . "dba") (virtuoso-password . "*") (sparql-scheme . http) (sparql-host . "localhost") - (sparql-port . 8892) - (generif-data-file . "/export3/local/home/bonfacem/dump-genenetwork-database/generifs_basic.gz")) + (sparql-port . 9082)) |