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| author | Munyoki Kilyungi | 2023-11-24 14:42:32 +0300 |
|---|---|---|
| committer | Munyoki Kilyungi | 2023-11-24 14:42:32 +0300 |
| commit | 54ba0cc5e8ed477a0d98f6a35cad74115814e257 (patch) | |
| tree | 8691e8052b055492d93dc8996d71d1bf97e1cbb3 /transform | |
| parent | dbc5bbac28deb8ffe2ae2ec0e037885bba9e5be0 (diff) | |
| download | gn-transform-databases-54ba0cc5e8ed477a0d98f6a35cad74115814e257.tar.gz | |
Move remap-species-identifier to strings.scm.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'transform')
| -rw-r--r-- | transform/strings.scm | 12 |
1 files changed, 12 insertions, 0 deletions
diff --git a/transform/strings.scm b/transform/strings.scm index 7d9bc82..7545f62 100644 --- a/transform/strings.scm +++ b/transform/strings.scm @@ -11,6 +11,7 @@ delete-substrings replace-substrings remove-duplicates + remap-species-identifiers str sanitize-rdf-string snake->lower-camel lower-case-and-replace-spaces @@ -119,3 +120,14 @@ association list mapping substrings to their replacements." ((null? lst) (reverse result)) ((memq (car lst) result) (loop (cdr lst) result)) (else (loop (cdr lst) (cons (car lst) result)))))) + + +(define (remap-species-identifiers str) + "This procedure remaps identifiers to standard binominal. Obviously this should + be sorted by correcting the database!" + (match str + ["Fly (Drosophila melanogaster dm6)" "Drosophila melanogaster"] + ["Oryzias latipes (Japanese medaka)" "Oryzias latipes"] + ["Macaca mulatta" "Macaca nemestrina"] + ["Bat (Glossophaga soricina)" "Glossophaga soricina"] + [str str])) |