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authorMunyoki Kilyungi2026-01-27 16:42:43 +0300
committerMunyoki Kilyungi2026-01-27 16:42:43 +0300
commit63c1af8d4e855979bec53e716dd046df44c956bc (patch)
treef1d48a08d19909b5d21afd70f76d1deb67994422 /examples
parent509485bf2db7ffd9367626f11617ae7d443cde04 (diff)
downloadgn-transform-databases-63c1af8d4e855979bec53e716dd046df44c956bc.tar.gz
Rename tissue.scm -> molecular-traits.scm.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'examples')
-rwxr-xr-xexamples/molecular-traits.scm (renamed from examples/tissue.scm)13
1 files changed, 10 insertions, 3 deletions
diff --git a/examples/tissue.scm b/examples/molecular-traits.scm
index 82cc226..737c0b0 100755
--- a/examples/tissue.scm
+++ b/examples/molecular-traits.scm
@@ -17,9 +17,13 @@
   ;; and BIRN_lex_Name are mostly NULL.
   (tables (Tissue))
   (schema-triples
-   (gnc:tissue a skos:Concept))
-  ;; Hopefully the Short_Name field is distinct and can be used as an
-  ;; identifier.
+   (gnc:tissue a owl:Class)
+   (gnc:tissue rdfs:subClassOf obo:UBERON_0000479) ; Anatomical Entity
+   (gnc:tissue rdfs:label "Tissue (GN)")
+   (gnt:has_tissue rdf:type owl:ObjectProperty)
+   (gnt:has_tissue rdfs:domain gnc:molecular_traits)
+   (gnt:has_tissue rdfs:range gnc:tissue)
+   (gnt:has_tissue rdfs:label "has tissue"))
   (triples (string->identifier "tissue" (field Tissue Short_Name)
                                #:separator "_")
     (set rdf:type 'gnc:tissue)
@@ -44,6 +48,8 @@
    (table-metadata? #f)
    (prefixes
     '(("gn:" "<http://rdf.genenetwork.org/v1/id/>")
+      ("obo:" "<http://purl.obolibrary.org/obo/>")
+      ("owl:" "<http://www.w3.org/2002/07/owl#>")
       ("gnt:" "<http://rdf.genenetwork.org/v1/term/>")
       ("skos:" "<http://www.w3.org/2004/02/skos/core#>")
       ("gnc:" "<http://rdf.genenetwork.org/v1/category/>")
@@ -54,3 +60,4 @@
    (outputs
     `(#:documentation ,documentation
       #:rdf ,output))))
+;; http://purl.obolibrary.org/obo/UBERON_0000479